PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30039.m000243
Common NameRCOM_1264090
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WOX
Protein Properties Length: 163aa    MW: 19451.3 Da    PI: 10.5371
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30039.m000243genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox651.1e-20766357
                   --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   +R+++t+eql +Leel+++  r+p+a+++++++++l    +++ ++V++WFqN++a++++
  30039.m000243  7 SRWCPTPEQLMILEELYRNgIRTPNASQIQRITAHLslygKIEGKNVFYWFQNHKARDRQ 66
                   7*****************99*************************************996 PP
2Wus_type_Homeobox121.82.7e-39567264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a++RW+PtpeQ++iLeely++G+rtPn+++iqrita+L+ yGkie+kNVfyWFQN+kaR+rqk
      30039.m000243  5 ASSRWCPTPEQLMILEELYRNGIRTPNASQIQRITAHLSLYGKIEGKNVFYWFQNHKARDRQK 67
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.106267IPR001356Homeobox domain
SMARTSM003896.4E-6471IPR001356Homeobox domain
SuperFamilySSF466892.44E-11767IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-8766IPR009057Homeodomain-like
PfamPF000461.8E-18766IPR001356Homeobox domain
CDDcd000862.16E-4867No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSPAASSRWC PTPEQLMILE ELYRNGIRTP NASQIQRITA HLSLYGKIEG KNVFYWFQNH  60
KARDRQKLRR KLIKQLQQQQ QFYHHHHHLQ NPDDHHQLHL LNQSHHQHLL NYFDLPPPPH  120
PPTSSFHPLP YHNPAAFLPL HQLWLISSIL DHKNISKKVR KIQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap30039.m000243
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015583111.11e-100WUSCHEL-related homeobox 3
TrEMBLB9T3K11e-114B9T3K1_RICCO; Uncharacterized protein
STRINGXP_002532820.11e-115(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-38WOX family protein