PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30032.m000462
Common NameRCOM_1258760
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 373aa    MW: 43122.9 Da    PI: 6.648
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30032.m000462genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.69.2e-32137239199
                    EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                    f+k ltpsdv+k++rlv+pk++ae++    g +  ++  l++ede g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F+++ r ++++
  30032.m000462 137 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgGDSVDKGLLLSFEDELGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKQLDAGDVVLFERH-RlDGER 231
                    99***************************955556889*************************************************75.559999 PP

                    .EEEEE-S CS
             B3  92 lvvkvfrk 99 
                    l+++++r+
  30032.m000462 232 LFIGWRRR 239
                    ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-40128247IPR015300DNA-binding pseudobarrel domain
CDDcd100174.62E-28136230No hitNo description
SuperFamilySSF1019361.44E-29136239IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.4E-25137240IPR003340B3 DNA binding domain
PfamPF023621.6E-28137239IPR003340B3 DNA binding domain
PROSITE profilePS5086313.944137240IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MSINQFSRDL PETLWWSQHQ QRQHQQHQSF MEPNPNTAHK PLIPNPNSSW PSHFYQHHHH  60
HQQNSWLNPY SNSQEPDQMS TAQNPSLTFN LNHEDIEEEQ DPLEEQEKHY RNNQEQHLHQ  120
QQHHQEREEQ NEKEGMFEKP LTPSDVGKLN RLVIPKQHAE KYFPLGGDSV DKGLLLSFED  180
ELGKCWRFRY SYWNSSQSYV LTKGWSRYVK DKQLDAGDVV LFERHRLDGE RLFIGWRRRD  240
NNHTNTSSCS SSSGVMVQGS SGGVWSRVLY SQQQHQPYQL GHGANVTTRV PYQPDCLHAG  300
SGGQNQTIPI GNSKRFRLFG VNLECQLDDS EPSTPDGSSM SSQGPNQQQQ FYSSHSPYNS  360
SSTGSQGHMV SYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-491322393113B3 domain-containing transcription factor NGA1
5os9_B5e-491322393113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30032.m000462
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530522.20.0B3 domain-containing protein At2g36080
SwissprotQ8RYD38e-68Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLB9SX030.0B9SX03_RICCO; Transcription factor, putative
STRINGXP_002530522.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.11e-65B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]