PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30025.m000581

Common Name

RCOM_1247520

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Dof

Protein Properties

Length: 338aa MW: 35494.9 Da PI: 9.7607

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30025.m000581	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	87.8	9.9e-28	85	127	20	62
zf-Dof 20 yynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 y+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ 30025.m000581 85 YFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 127 ****************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101447	2.33E-6	49	58	No hit	No description
ProDom	PD007478	9.0E-16	69	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	20.607	71	125	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.9E-22	84	125	IPR003851	Zinc finger, Dof-type
SuperFamily	SSF101447	2.33E-6	309	327	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MVFSSLPAYL DPANWQQRVR QPNHHHHHHH QPGASTGANA HLIPPTPPPP PPPPPPPPPH 60 GSGGAGSIRP GSMADRARLA NIXXYFNNYS LTQPRHFCKT CRRYWTRGGA LRNVPVGGGC 120 RRNKRSKGSS SSKSPVSSDR QTASGTSSTL SSSGTSDILG LGPQVPPLRF MAPLHHLNEY 180 APCDIGLNYG ALSAPVGGTS DLNFQIGSAL ASTGLGGGSG VAGGSLLSMG GLEQWRLQQG 240 QQFPFLGGLD PSSSAGLYPF EGGAEPSGYG GGIGGQVRPR TSTSLTTQFA SVKMEDNHEL 300 NLSRQFLGIN NPGSDQYWSS TAWTDLSSFS SSSTSNPL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30025.m000581

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015580002.1	1e-171	dof zinc finger protein DOF5.1
TrEMBL	B9SP09	0.0	B9SP09_RICCO; Zinc finger protein, putative
STRING	XP_002527728.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	3e-23	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	30025.m000581