PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30014.m000446

Common Name

LOC8288694, RCOM_1227970

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

TCP

Protein Properties

Length: 229aa MW: 24200.9 Da PI: 10.2008

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30014.m000446	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.6	2.1e-38	30	128	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 ++kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ a+ ++ + 30014.m000446 30 TVKKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSVRAGGKRVRtteedennk 124 689*************************************************************99999777.22332222211111122222223 PP TCP 89 ...k 89 30014.m000446 125 ddvG 128 3440 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.5E-34	36	125	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	36	90	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MSNSETVANN GAIINPSANN SNSNTNGALT VKKAPSKDRH SKVDGRGRRI RMPIICAARV 60 FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTTPASF STVSVSVRAG GKRVRTTEED 120 ENNKDDVGVS VGPTAAVGSL VGHPPPQPHQ GFWALPARPD FWGFATAPPD LAAVQQQTSL 180 FVQQHQQQQA AMGEASAARV GNYLPGHLNL LASLSGGPGS SGRREDDHR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30014.m000446

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002528879.1	1e-168	transcription factor TCP21 isoform X2
Swissprot	Q9FMX2	1e-78	TCP7_ARATH; Transcription factor TCP7
TrEMBL	B9SSB0	1e-167	B9SSB0_RICCO; Transcription factor, putative
STRING	XP_002528879.1	1e-168	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-54	TCP family protein

Link Out ? help Back to Top
Phytozome	30014.m000446
Entrez Gene	8288694