PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30010.m000675 | ||||||||
Common Name | LOC8285898, RCOM_1225970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | WRKY | ||||||||
Protein Properties | Length: 652aa MW: 70283.2 Da PI: 6.3127 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.4e-30 | 362 | 420 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ 30010.m000675 362 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 420 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.58.70 | 6.6E-4 | 169 | 233 | No hit | No description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-33 | 346 | 422 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.28E-27 | 354 | 422 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.792 | 356 | 422 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-36 | 361 | 421 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-26 | 363 | 420 | IPR003657 | WRKY domain |
Gene3D | G3DSA:1.20.58.70 | 6.6E-4 | 537 | 569 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 652 aa Download sequence Send to blast |
MAKGRSGLSI DSDLISSGFF IHKPPTVLNS FPEDHHHHHH QHSITAATLM DATAASAKSP 60 SPPSTIQFPV NLNSIHRHHH GNSNINEDDD LSLPSDHDYK RTAIDEMDFF AEKHHRDDDD 120 DDDVKPTNNT SPTIDDFKDP KSLGFDVNTG LNLLTTNTSS DQSMVDDGIS SNMEDKRAKN 180 ELAVLQAELE RMKVENLRLR DMLSQVTSNY NALQMHLVTL MQDQKQSRDE ITNGEEKKKH 240 NGNGTAVGPR QFMDLGLAAA TAGGAGGDTD ELSLSSSEGR SRDRSRSPGN NNNNNIEDGT 300 AFDQDKKGIN GGIEREDSPD QGWGSNKVAR FNSSKNSVDQ TEATIRKARV SVRARSEAPM 360 ITDGCQWRKY GQKMAKGNPC PRAYYRCTMA AGCPVRKQVQ RCAEDRTILI TTYEGNHNHP 420 LPPAAMAMAS TTSSAARMLL SGSMSSADGI MNPNFLTRTI LPCSSSMATI SASAPFPTVT 480 LDLTQNPNPL QFQRQQTQFQ VPFPNPPQNF ANSPAAALLP QIFGQALYNQ SKFSGLQMSQ 540 DVEGNNKLGN QSQPGPIQQQ QQGQQNSLAD TVSAATAAIA ADPNFTAALA AAITSIIGGG 600 GGSNGGAHPS NITHITDNNN LTSTSNNNGN VTTTNNNSNA NNKITNSGFQ GN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-22 | 348 | 424 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30010.m000675 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002524838.1 | 0.0 | probable WRKY transcription factor 31 isoform X2 | ||||
Swissprot | Q9C519 | 1e-150 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | B9SFR9 | 0.0 | B9SFR9_RICCO; WRKY transcription factor, putative | ||||
STRING | XP_002524838.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-109 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | 30010.m000675 |
Entrez Gene | 8285898 |