PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30006.m000282
Common NameRCOM_1215720
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family AP2
Protein Properties Length: 440aa    MW: 49055.1 Da    PI: 9.2267
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30006.m000282genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.72.9e-1366122155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  30006.m000282  66 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 122
                    57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-1566131IPR016177DNA-binding domain
PfamPF008476.3E-966122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-1267131IPR001471AP2/ERF domain
SMARTSM003801.1E-1967136IPR001471AP2/ERF domain
PROSITE profilePS5103218.51867130IPR001471AP2/ERF domain
PRINTSPR003674.5E-56879IPR001471AP2/ERF domain
PRINTSPR003674.5E-5112132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MASSSSDPGL KPELGGGSGG ESSEAVIAND QLLLYRQLKK PKKERGCTAK ERISKMPPCT  60
AGKRSSIYRG VTRHRWTGRY EAHLWDKSTW NQNQNKKGKQ GAYDDEEAAA RAYDLAALKY  120
WGPGTLINFP VTDYSRDLEE MQNVSREEYL ASLRRKSSGF SRGISKYRGL SSQWDSSFGR  180
MPGSEYFSSI NYGAADDPAA ESEYVGSLCF ERKIDLTSYI RWWGFNKTRE SVSKSSDERK  240
HGYGEDISEL KSSEWAVQST EPYQMPRLGM PDNGKKHKCS KISALSILSH SAAYKNLQEK  300
ASKKQENCTD NDEKENKKTN KMDYGKAVEK STSHDGSNER LGAALGMSGG LSLQRNAYQL  360
APFLSAPLLT NYNAIDPLVD PILWTSLVPV LPAGFSRNSE VGMGLQIVSC HKDRDKFNLY  420
LLSAGGVSTF LLLVVHWRFC
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30006.m000282
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581066.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK21e-151AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLB9SU380.0B9SU38_RICCO; DNA binding protein, putative
STRINGXP_002529507.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-137AP2 family protein