PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29992.m001420 | ||||||||
Common Name | LOC8281204, RCOM_1188340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | NF-YB | ||||||||
Protein Properties | Length: 233aa MW: 25770.4 Da PI: 5.8657 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 178.4 | 6.5e-56 | 60 | 155 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrkting+d++wa++tlGfedyv+plk+y++kyre+egek 29992.m001420 60 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGEDIIWAITTLGFEDYVAPLKLYISKYREIEGEK 155 89*******************************************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.2E-52 | 56 | 177 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.2E-39 | 62 | 166 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.4E-28 | 65 | 129 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.2E-19 | 93 | 111 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 96 | 112 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.2E-19 | 112 | 130 | No hit | No description |
PRINTS | PR00615 | 1.2E-19 | 131 | 149 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MEDESNGSGP YGPSLGSPES PCLKSTTSSS TATTTTNNNN KSSNSNNKNN NCSSSNNINK 60 EQDRFLPIAN VGRIMKKVIP GNGKISKDAK ETVQECVSEF ISFVTGEASD KCQREKRKTI 120 NGEDIIWAIT TLGFEDYVAP LKLYISKYRE IEGEKLNIPK QQRIEQRVQH QQQEQEQNLP 180 PYSSVYSSTA STAPMSQPSF VATDQAFSLA FSSSTSIQKQ LQQQDQIDSV GHW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 3e-45 | 55 | 150 | 2 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29992.m001420 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002516312.1 | 1e-172 | nuclear transcription factor Y subunit B-3 | ||||
Swissprot | Q9SIT9 | 3e-68 | NFYB7_ARATH; Nuclear transcription factor Y subunit B-7 | ||||
TrEMBL | B9RRE3 | 1e-171 | B9RRE3_RICCO; Ccaat-binding transcription factor subunit A, putative | ||||
STRING | XP_002516312.1 | 1e-172 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13249 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G13570.1 | 7e-64 | nuclear factor Y, subunit B7 |
Link Out ? help Back to Top | |
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Phytozome | 29992.m001420 |
Entrez Gene | 8281204 |
Publications ? help Back to Top | |||
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