PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29990.m000497
Common NameLOC8282060, RCOM_1183250
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 532aa    MW: 58991.3 Da    PI: 5.0805
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29990.m000497genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.83e-30270329159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  29990.m000497 270 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 329
                    58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-32255331IPR003657WRKY domain
SuperFamilySSF1182902.48E-27264331IPR003657WRKY domain
PROSITE profilePS5081128.736265331IPR003657WRKY domain
SMARTSM007743.2E-37270330IPR003657WRKY domain
PfamPF031064.3E-27271329IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MGREDMKMDI DLSLRIDTEN KEDTELKEEE AEEEEEEEKE AKKVQEIMQE NNCQEDDAQE  60
TNDYNEATAT TGVAEGEVVD DSCIELSLQD TTKTEELPAL QMEISRMKEE NEVLRKVVEQ  120
TMKDYYDLQI KFAIVQQNTH KDPHVFLPIR NNEKDLDQEP NSVPKFLDTK TNDQRFLSHL  180
SMNKRIVEES ELGLSLRLQT DHSDQQEKEE DKEENKEENG NYMPPFPSVQ NKHPRTDHHQ  240
LAAGVTSPGA SLANRKSRVS VRARCQGATM NDGCQWRKYG QKIAKGNPCP RAYYRCTVAP  300
GCPVRKQVQR CLEDMSILIT TYEGTHNHPL PVGATAMAST ASAAASFMLL DSSNPFSDGI  360
SNFTPPSIPY RGASHVFYPH SSPFRSVNPN DPSKGIVLDL TNNYSTHHDH QPPPQFPLAS  420
SSSSARPAFS WLQGMKSSTH QNNGNSTHFT SARVVEGTKS LLAENVTAIA SDPKFRVAVA  480
AAITSLINKE KGGAPPSLVA NKEAGEGGSS SSSKNWVLDS LSANGKPIRN SP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-22257333176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29990.m000497
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527935.10.0probable WRKY transcription factor 9
SwissprotQ9C9F03e-80WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLB9SPL60.0B9SPL6_RICCO; WRKY transcription factor, putative
STRINGXP_002527935.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.14e-71WRKY DNA-binding protein 9