PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29986.m001656
Common NameLOC8259910, RCOM_1179490
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 299aa    MW: 33715.5 Da    PI: 5.516
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29986.m001656genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-1979127355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  29986.m001656  79 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 127
                    9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.1E-3878141IPR001471AP2/ERF domain
PROSITE profilePS5103223.77578135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-3278136IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2278136IPR016177DNA-binding domain
CDDcd000181.02E-3379136No hitNo description
PRINTSPR003677.6E-127990IPR001471AP2/ERF domain
PfamPF008476.0E-1279127IPR001471AP2/ERF domain
PRINTSPR003677.6E-12101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MCGGAIIANL IHPQRGDRSV TASDLWPNPD SFFSKLTPFE SHRDTFINPD SFTRKRSQLA  60
SGDAQVDKTP VKRQRKNLYR GIRQRPWGKW AAEIRDPRKG VRVWLGTFNT AEEAARAYDR  120
EARKIRGKKA KVNFPNEDDE YSITQNPPPL TQHIACNFSN LPKTCNFGFG YDLNQIGSYS  180
SNSGSVTEEE ACPGVSKQNV NSNNYIGEVK VKQEEAKMEV EKVNNGETVI IDLESRQQEN  240
EVQKLSEELM AYENYMKFYQ IPYLDGQSPA PNTAAAAQES VVGSLWNFDD YVDDAVVSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2279135360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29986.m001656
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002523125.10.0ethylene-responsive transcription factor RAP2-2
TrEMBLB9SAV60.0B9SAV6_RICCO; Uncharacterized protein
STRINGXP_002523125.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.15e-32ethylene-responsive element binding protein