PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29983.m003297 | ||||||||
Common Name | LOC8285002, RCOM_1176860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 272aa MW: 30411.4 Da PI: 8.6752 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.6 | 2.7e-32 | 62 | 118 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 vrYkeClkNhAa +Gg+a+DGCgEfmps ge+g+ +alkC+AC+CHRnFHR+e e e 29983.m003297 62 VVRYKECLKNHAAPMGGNATDGCGEFMPS-GEQGSLEALKCSACNCHRNFHRKEIEGE 118 68**************************9.999*********************9865 PP | |||||||
2 | Homeobox | 15.1 | 3.9e-05 | 206 | 261 | 1 | 52 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 +r Rt+ft+eq + + ++ e k +++ ++ ++ +++g++ r+ kvW +N + 29983.m003297 206 KRFRTKFTEEQKQKMRNFAEkagwKMQKLEESVVQRFCQEIGIKRRVLKVWMHNNK 261 789************8876688878*****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.9E-29 | 63 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-25 | 63 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.1E-30 | 64 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.821 | 65 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-28 | 199 | 267 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.56E-19 | 200 | 266 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.568 | 203 | 267 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 4.4E-28 | 205 | 261 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 0.00329 | 206 | 259 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MEGEKEMNHL SPQKDMPTPR NSSCAGGNGH ILITSSPASQ IPYSVPTHSS LLEDQRPYKN 60 VVVRYKECLK NHAAPMGGNA TDGCGEFMPS GEQGSLEALK CSACNCHRNF HRKEIEGESA 120 IDLFHSPVLH NPGGRFILGH HSNIIGSPQG FPINALLSSR PPPNQPMIVS YTSGSVPSES 180 DEKDYDDDNE DGAVVAIRQV DQKLKKRFRT KFTEEQKQKM RNFAEKAGWK MQKLEESVVQ 240 RFCQEIGIKR RVLKVWMHNN KHHFSKKMSA AS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 2e-20 | 204 | 262 | 16 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29983.m003297 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002518018.1 | 0.0 | zinc-finger homeodomain protein 4 | ||||
Swissprot | O64722 | 1e-69 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | B9RW99 | 0.0 | B9RW99_RICCO; Uncharacterized protein | ||||
STRING | XP_002518018.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 4e-68 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | 29983.m003297 |
Entrez Gene | 8285002 |
Publications ? help Back to Top | |||
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