PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29983.m003297
Common NameLOC8285002, RCOM_1176860
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ZF-HD
Protein Properties Length: 272aa    MW: 30411.4 Da    PI: 8.6752
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29983.m003297genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.62.7e-3262118360
    ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                     vrYkeClkNhAa +Gg+a+DGCgEfmps ge+g+ +alkC+AC+CHRnFHR+e e e
  29983.m003297  62 VVRYKECLKNHAAPMGGNATDGCGEFMPS-GEQGSLEALKCSACNCHRNFHRKEIEGE 118
                    68**************************9.999*********************9865 PP

2Homeobox15.13.9e-05206261152
                    TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 
                    +r Rt+ft+eq + + ++ e    k +++ ++  ++  +++g++ r+ kvW +N +
  29983.m003297 206 KRFRTKFTEEQKQKMRNFAEkagwKMQKLEESVVQRFCQEIGIKRRVLKVWMHNNK 261
                    789************8876688878*****************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.9E-2963115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2563120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-3064115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.82165114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.2E-28199267IPR009057Homeodomain-like
SuperFamilySSF466897.56E-19200266IPR009057Homeodomain-like
PROSITE profilePS500718.568203267IPR001356Homeobox domain
TIGRFAMsTIGR015654.4E-28205261IPR006455Homeodomain, ZF-HD class
CDDcd000860.00329206259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEGEKEMNHL SPQKDMPTPR NSSCAGGNGH ILITSSPASQ IPYSVPTHSS LLEDQRPYKN  60
VVVRYKECLK NHAAPMGGNA TDGCGEFMPS GEQGSLEALK CSACNCHRNF HRKEIEGESA  120
IDLFHSPVLH NPGGRFILGH HSNIIGSPQG FPINALLSSR PPPNQPMIVS YTSGSVPSES  180
DEKDYDDDNE DGAVVAIRQV DQKLKKRFRT KFTEEQKQKM RNFAEKAGWK MQKLEESVVQ  240
RFCQEIGIKR RVLKVWMHNN KHHFSKKMSA AS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-202042621674ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29983.m003297
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518018.10.0zinc-finger homeodomain protein 4
SwissprotO647221e-69ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLB9RW990.0B9RW99_RICCO; Uncharacterized protein
STRINGXP_002518018.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.14e-68homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]