PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29983.m003151
Common NameRCOM_1173300
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 236aa    MW: 27221 Da    PI: 8.4887
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29983.m003151genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82.1e-09133154426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    ++C+ f+r G C++Gd+C FaHg
  29983.m003151 133 AICPEFRR-GGCSRGDSCEFAHG 154
                    79******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.81E-5128158IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-6129155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.281130156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-6132156IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7133154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4161192IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.484164188IPR000571Zinc finger, CCCH-type
SMARTSM003561.6164187IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSTVCAEQHK LYPSHPLFSP NKSFKDLDIP PRKLLSKKTF QESSPDMLSS PFESHLHKFL  60
PCNDLISSDN NHDQRGSDDQ DLDPYSSDHF RMYEFKVRRC TRSRSHDWTD CPFAHPGEKA  120
LRRDPRKYHY SGAICPEFRR GGCSRGDSCE FAHGVFECWL HPSRYRTEAC KDGKNCKRKV  180
CFFAHSPRQL RILPEVSCGA INKYVPCVTT IVSFLITAFI TGETAILKWV FTYLSV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29983.m003151
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573898.11e-152zinc finger CCCH domain-containing protein 2
SwissprotQ9ZWA15e-73C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLB9RVV61e-176B9RVV6_RICCO; Uncharacterized protein
STRINGXP_002517875.11e-176(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-75C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]