PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29983.m003128
Common NameLOC8269122, RCOM_1172170
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HB-other
Protein Properties Length: 1784aa    MW: 199851 Da    PI: 5.32
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29983.m003128genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.3e-192480157
                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
       Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                   ++kR   t++qle+Le+ ++ + yps+e r+eL+++lgLt+rq ++WF+ rR k++k
  29983.m003128 24 KSKRKMKTASQLEILEKTYAVETYPSEELRAELSAQLGLTDRQLQMWFCHRRLKDRK 80
                   679****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-18880IPR009057Homeodomain-like
SuperFamilySSF466897.27E-161880IPR009057Homeodomain-like
PROSITE profilePS5007116.6652181IPR001356Homeobox domain
SMARTSM003899.7E-162385IPR001356Homeobox domain
PfamPF000461.7E-162480IPR001356Homeobox domain
CDDcd000862.77E-142480No hitNo description
SMARTSM005713.8E-22553612IPR018501DDT domain
PROSITE profilePS5082717.154553612IPR018501DDT domain
PfamPF027911.3E-16554609IPR018501DDT domain
PfamPF050661.0E-15735802IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156124.8E-8951992IPR028942WHIM1 domain
PfamPF156137.5E-1411331205IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1784 aa     Download sequence    Send to blast
MEAGGSGGGG SEGEKKKPPE GEVKSKRKMK TASQLEILEK TYAVETYPSE ELRAELSAQL  60
GLTDRQLQMW FCHRRLKDRK GPPVKRQRKD ESPAPSVVPG GEVTGVAAEV RNELLPMPAA  120
GSSPFGHGMD SRRVVARTPG VAVARISSEM SAIKRYYEPQ QAIAELRAIA FVEAQLGEPL  180
REDGPILGME FDPLPPDAFG APIATVGQQK QPGRPYEANL YERPDVKTIK GTRPVHEYQF  240
LPQQPTVRAD AYERVTTNYH YGSPADSHNT KTAALSTARP FVHANEQVSS GYSFPSQLPS  300
LNLMPQEGRQ GHLLSSATGE YDTVLRKSSL TNIGMDAHPI NALDNPFMPS DKRVAPDEDV  360
LRIERKRKIE EARIAREVEA HEKRIRKELE KQDVLRRKRE EQIKKEMERH DRERRKEEER  420
LLREKQREEE RYQREQRREL ERRERYLQKE FIRAEKMRQK EELRREKEAA RQKAATERAI  480
ARRIAKESME LVDDERLELM ELAASSKGLP SVASLDFETL QNLDTFRDKL AVFPPKSVLL  540
KKPFSIQPWN DSEENVGNLL MVWRFLITFA DVLGMWPFTL DEFVQAFHDF DPRLLGEMHV  600
ALLRTIIKDI EDVARTPATG LGANQNSAAN PGGGHPQIVE GAYAWGFDIC SWQRHLNPLT  660
WPEILRQFAL SAGFGPQLKK RNVEQAYHRD ENEGNDGEDV ITNLRNGSAV ENAVAIMQER  720
GFSNPRRSRH RLTPGTVKFA AFHVLSLEGS KGLTILEVAE KIQKSGLRDL TTSKTPEASI  780
AAALSRDSKL FERTAPSTYC VRPAYRKDPT DAEAILSAAR ERIRTFTSGF VDGEDADDAE  840
RDDDSESDVA DDPDIEDLGT DLNPKTEASN SPELSKFSAK THSENGNEGG DVTRTPQVRL  900
QNLGEGLSLM HSDSNNEVKG VASSIDHSVD VGIPTNIKQE DADIDESNLG EPWVQGLIEG  960
EYSDLSVEER LNAFVALIGV AIEGNSIRVV LEERLEAANA LKKQIWAEAQ LDKRRMKEEY  1020
VTKMHYPSFT GNKVEPNLTT STPEARQSPS VTANEKVNEM LMNGGAQQEQ SNGPQNDMNY  1080
LNNIPSEGNL QMQDLSAGPD NLLYMQPGLV ADKSRSQLKS FIGHKAEEMY VYRSLPLGQD  1140
RRRNRYWQFT TSNSCNDPGC GRIFVELRDG RWRLVDSEKD FDSLLTSLDA RGVRESHLHM  1200
MLQKIEMSFK EAVRRKLLSA DMERQSGDTV KAEAGDMVTG PDCHTGTDSP SSTVCIADSD  1260
VSETSTSFAV ELGRNESERN QALRRYQDFE KWMWKECFNG LVLCASKYGK KRSRQLVGVC  1320
DYCHGIYFSE DDQCPCSRTC EKPGSDLNFS KHMVHCEEKS RVGLAYSSHA SSSPLRIRLL  1380
KMQLALIEVS LLQEALQPVW TNGYRKSWGM RLQSSLSAED LLQVLTLLEV SIKRDYLSSK  1440
FETTSELLGS IHSFGSSGND SSRKENVPVL PWLPRTTAAV ALRVMEFDSS ISYTPHQKME  1500
SQKDRGNGDF IKLPSKFAIV KNTQDNEATR THHKAPHKAG LFQEDNWADV GIGSAKLARG  1560
RASRGRGRSH TSGTNSRSRA GSSRSESGKR SLASNNNRSG QVLSWKGQSR ARGGRKRGRR  1620
SVRSRQKPVK RAVDVAAQTN VAKEIIYEKV PTKLEREDWN IDETRFQSRI AENLSSSERS  1680
EYDDENGQAT GDEYDDLPVD DYTGGFNGKS DDLLEGSDYN MDPNEEEDDE DDDEADLDED  1740
DQGDLDVEGY INGDSNDDGI RDGDGEQNGD PDEGTGSSSS DFSD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29983.m003128
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517852.10.0homeobox-DDT domain protein RLT2 isoform X2
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLB9RVT30.0B9RVT3_RICCO; Homeobox protein, putative
STRINGXP_002517852.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator