PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29983.m003123 | ||||||||
Common Name | LOC8269117, RCOM_1172120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 150aa MW: 17362.8 Da PI: 9.79 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57 | 3.3e-18 | 20 | 72 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++ +eql++Le+ F+ n++++ae + eLA++lg++ rqV +W+qNrRa+++ 29983.m003123 20 KKRLAREQLQILESSFNANQKLKAEFKLELARQLGVPPRQVAIWYQNRRARHR 72 556889*********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 90.9 | 1.5e-29 | 20 | 110 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k+rl++eq+++LE+sF++++kL+ e K elar+Lg+ prqva+W+qnrRAR++ E++y+ +++++ ++++e+ +Lekev+ L+ el++ 29983.m003123 20 KKRLAREQLQILESSFNANQKLKAEFKLELARQLGVPPRQVAIWYQNRRARHRVETKEQEYNNIQQELRNVSAEKIKLEKEVDMLKYELNK 110 9*************************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.985 | 14 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.9E-14 | 16 | 78 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.6E-17 | 16 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.27E-11 | 20 | 72 | No hit | No description |
Pfam | PF00046 | 8.2E-16 | 20 | 72 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-18 | 22 | 81 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.2E-5 | 45 | 54 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 49 | 72 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.2E-5 | 54 | 70 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MNSHFHQSQT PSQHSSKPSK KRLAREQLQI LESSFNANQK LKAEFKLELA RQLGVPPRQV 60 AIWYQNRRAR HRVETKEQEY NNIQQELRNV SAEKIKLEKE VDMLKYELNK AHEMLILAST 120 PSATSLLSSS ASDDDICQLI LTCKPHLWLA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29983.m003123 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002517847.2 | 7e-93 | LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | B9RVS8 | 1e-106 | B9RVS8_RICCO; Homeobox protein, putative | ||||
STRING | XP_002517847.1 | 1e-106 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16535 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 5e-22 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Phytozome | 29983.m003123 |
Entrez Gene | 8269117 |