PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29955.m001177
Common NameLOC8286238, RCOM_1130970
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bZIP
Protein Properties Length: 231aa    MW: 26457.1 Da    PI: 5.2779
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29955.m001177genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.83.5e-16149207360
                    XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHH CS
         bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk.eleelkkevaklk 60 
                    + +++rr++kNRe+A rsR+RK+a++ eLe  v +Le+eN +L++ e+e+ k+ +++l 
  29955.m001177 149 SQQKQRRMIKNRESAARSRERKQAYTMELESLVTQLEEENARLRSeEVEQSKERCKELM 207
                    6789***************************************9736999999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.2E-15144208No hitNo description
SMARTSM003381.1E-11147212IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.289149201IPR004827Basic-leucine zipper domain
PfamPF001702.8E-14149207IPR004827Basic-leucine zipper domain
CDDcd147072.23E-17151192No hitNo description
SuperFamilySSF579591.69E-10151197No hitNo description
PROSITE patternPS000360154169IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MASSKVMATA TTSTTNTDLP REPSLCSSLS TLLADLQNQS MYTYTNESGG ASVTRADDEA  60
WEGMTLEDFL TKAGAVREED VREAYYDDCV DIVNSNNNNS NKYNKIENNN NNNNNNNDNY  120
VNNESKGQLN QGRHKRRAVV EDAPLDKASQ QKQRRMIKNR ESAARSRERK QAYTMELESL  180
VTQLEEENAR LRSEEVEQSK ERCKELMENL IPVVEKRRPP RVIRRVNSVQ W
Cis-element ? help Back to Top
SourceLink
PlantRegMap29955.m001177
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518841.11e-169bZIP transcription factor 12
TrEMBLB9RYM21e-168B9RYM2_RICCO; G-box-binding factor, putative
STRINGXP_002518841.11e-168(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20283481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.17e-32bZIP family protein