PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29950.m001149
Common NameLOC8276523, RCOM_1121810
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family G2-like
Protein Properties Length: 419aa    MW: 46214.7 Da    PI: 7.2023
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29950.m001149genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.84.9e-3346100155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    kprl+Wt++LHe+F+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
  29950.m001149  46 KPRLKWTSDLHEHFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100
                    79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-3044101IPR009057Homeodomain-like
SuperFamilySSF466893.58E-1645101IPR009057Homeodomain-like
TIGRFAMsTIGR015578.7E-2346101IPR006447Myb domain, plants
PfamPF002491.7E-84899IPR001005SANT/Myb domain
PfamPF143797.1E-25147193IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MYHHHQHQGK SVHSSSRMSI PPERHLFLQG GNGPGDSGLV LSTDAKPRLK WTSDLHEHFI  60
EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQANS GSNKIGTGAV  120
VGDRISETNV THINNLSMGT QTNKGLHIGE ALQMQIEVQR RLHEQLEVQR HLQLRIEAQG  180
KYLQSVLEKA QETLGRQNLG SIGLEAAKVQ LSELVSKVST QCLNSAFSEL KELQGLCHQQ  240
TQTAPPTDCS MDSCLTSCEG SQKEQEIHNT GMGLRPYNGN ALLESKDITE GHVLHQTELK  300
WSEDLKDNKM FLSPLGNNAA RRNFAAERST SDLSMTVGLQ GENGNASSFS EGRYKDRNDG  360
DSFPDQTNKS LDSVKLPKGD VSQGYRLPYF ATKLDLNSHE EIDAASSCKQ LDLNGFSWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-2046102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-2046102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-2046102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-2046102157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29950.m001149
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525443.10.0myb-related protein 2
SwissprotQ9SQQ91e-159PHL9_ARATH; Myb-related protein 2
TrEMBLB9SHH40.0B9SHH4_RICCO; Transcription factor, putative
STRINGXP_002525443.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-158G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]