PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29949.m000123 | ||||||||
Common Name | LOC8284783, RCOM_1120400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | WRKY | ||||||||
Protein Properties | Length: 484aa MW: 52886.1 Da PI: 7.5356 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.4 | 8.2e-30 | 99 | 156 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +Dgy+WrKYGqK vkg+ef rsYY+Ct+++C+vkk++ers+ +++vv+i+Y g Hnh+k 29949.m000123 99 EDGYHWRKYGQKLVKGNEFIRSYYKCTHPNCQVKKQLERSH-NGQVVDIVYFGPHNHPK 156 7****************************************.***************85 PP | |||||||
2 | WRKY | 104.8 | 4.7e-33 | 267 | 325 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vkg+++prsYYrC+s+gCpvkk+ver+++d kvv++ YegeH+he 29949.m000123 267 VNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDSKVVITSYEGEHDHE 325 58********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.779 | 93 | 157 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-24 | 94 | 157 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-26 | 94 | 157 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-33 | 98 | 156 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-23 | 99 | 155 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.8E-35 | 253 | 327 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.93E-29 | 259 | 327 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.691 | 262 | 327 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-38 | 267 | 326 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.5E-26 | 268 | 324 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MVSSGERTDE VASNKLQKGQ SPDNEIHVSQ NQEEVTSVTL EKSLQDPDVS AGVRISQLDK 60 EGSISSIILG KVSQTPGTSS SVTQSGPEER SILREKVTED GYHWRKYGQK LVKGNEFIRS 120 YYKCTHPNCQ VKKQLERSHN GQVVDIVYFG PHNHPKPANN VPLAVGFVLS VVEDRASQPL 180 STSKQEDHVN QLPKSKSNSQ ISTVASSEDV KGVLSESTRI RDEVDNDDDL QSKRQKKGSH 240 NVEPTSVDKP SGEPRLVVQT LSEVDIVNDG YRWRKYGQKL VKGNPNPRSY YRCSSPGCPV 300 KKHVERASHD SKVVITSYEG EHDHEMPPSR TVTHNPTGVN IYTTAVHSGE LGAKSGGSNG 360 VVHNLGSSRN SKEQPSESRN KFKGSHVSGS EIVIFSGSGQ DNKLNQLQNG KSIATEGSDT 420 AGMDKHTVVN TSSVPQGRSN EQHDGESRTE PKVNYSACSV RTITPNAESN PNEKHIPNAE 480 PVQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-38 | 97 | 328 | 2 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00094 | SELEX | Transfer from AT2G04880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29949.m000123 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002533869.1 | 0.0 | WRKY transcription factor 1 | ||||
Swissprot | Q9SI37 | 1e-90 | WRKY1_ARATH; WRKY transcription factor 1 | ||||
TrEMBL | B9T6K0 | 0.0 | B9T6K0_RICCO; WRKY transcription factor, putative | ||||
STRING | XP_002533869.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9358 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 1e-94 | zinc-dependent activator protein-1 |
Link Out ? help Back to Top | |
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Phytozome | 29949.m000123 |
Entrez Gene | 8284783 |
Publications ? help Back to Top | |||
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