PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29933.m001381 | ||||||||
Common Name | RCOM_1095230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB_related | ||||||||
Protein Properties | Length: 180aa MW: 20437.9 Da PI: 6.9731 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.7e-17 | 10 | 73 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT..................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..................tWktIartmgkgRtlkqcksrwqky 47 +g WT+eEd++l d+++ +G+g W++Ia++++ gRt++q+k++w+++ 29933.m001381 10 KGLWTEEEDKILMDYINVHGKGrwnhiakktgmadsnmmaLWSLIAKRVP-GRTDNQVKNYWNTH 73 678***********************************************.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-12 | 3 | 39 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.43 | 5 | 78 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-14 | 9 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-9 | 10 | 41 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.59E-14 | 10 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.67E-13 | 13 | 74 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-12 | 51 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-7 | 51 | 73 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MESSDNKYKK GLWTEEEDKI LMDYINVHGK GRWNHIAKKT GMADSNMMAL WSLIAKRVPG 60 RTDNQVKNYW NTHISKKLAA GKQLSGRRFN VKDKTGKIAV SSSTNSMGLH SFSFSYVNNS 120 IATKEFTVDE DIQIASEVAD TQELTFFNSS YPYSFWFFDN EPELNIIGND FLGGYASDFA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29933.m001381 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015578183.2 | 1e-117 | transcription factor WER, partial | ||||
TrEMBL | B9SF72 | 1e-131 | B9SF72_RICCO; R2r3-myb transcription factor, putative | ||||
STRING | XP_002524641.1 | 1e-131 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 2e-33 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | 29933.m001381 |