PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29929.m004537
Common NameRCOM_1077530
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family AP2
Protein Properties Length: 729aa    MW: 79449.5 Da    PI: 6.5356
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29929.m004537genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.3e-11297353155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  29929.m004537 297 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 353
                    57*******************4444.2455535555.779999**************98 PP
2AP246.68.4e-15396447155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  29929.m004537 396 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 447
                    57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-8297353IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-14297363IPR016177DNA-binding domain
CDDcd000182.89E-19297363No hitNo description
Gene3DG3DSA:3.30.730.107.0E-12298362IPR001471AP2/ERF domain
PROSITE profilePS5103217.28298361IPR001471AP2/ERF domain
SMARTSM003801.0E-21298367IPR001471AP2/ERF domain
PRINTSPR003674.0E-6299310IPR001471AP2/ERF domain
PfamPF008471.0E-9396447IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-17396457IPR016177DNA-binding domain
CDDcd000181.69E-24396457No hitNo description
PROSITE profilePS5103219.045397455IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-18397456IPR001471AP2/ERF domain
SMARTSM003801.5E-33397461IPR001471AP2/ERF domain
PRINTSPR003674.0E-6437457IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MASMNNWLGF SLSPHELPSH SDHHQDHHSQ NTASRLGFHS DEIPGADVSG ECFDLPSDST  60
APSLNLPAPF GILEAFRNNQ SQDWNMKGLG MNPGTTYKTN SDLSMLMGSS CNTQSIDQNQ  120
EPKLENFLGV HSFSNHEHKL PACNTMYNTG TGDYMFQNCS LQQATPNDRT SNGEGTDSIN  180
ASSSNSSIGL SMIKTWLRNQ PAPTQQQQQQ QQETKNTNGG GAQSLSLSMS TGSQSGSPLT  240
LLAANGEGNN SSGDHSSSSD NNKQQKTTTL TNGIDSQTGA IEAVPRKSID TFGQRTSIYR  300
GVTRHRWTGR YEAHLWDNSC RREGQTRKGR QGGYDKEEKA ARAYDLAALK YWGATTTTNF  360
PISNYEKELE EMKHMTRQEY VASLRRKSSG FSRGASIYRG VTRHHQHGRW QARIGRVAGN  420
KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFDMSRYD VNSILESSTL PIGGAAKRLK  480
DAEQADMIDT QRTDTGNISS QLTDGIGSYA TALHGWPTLA FQQAHPPHQP FTMHYPYGQR  540
LWCKQEQDTD TNHSFQDIHQ LQLGNTHNFF QPSVLHNLMS MDSSSMEHSS GSNSVMYSNG  600
GGGHDGSNQG MGYGSNGGGG YAIPLATVIA NNSNDDGNQN QGIGFGDGEV KALGYENMYG  660
SSDPYHARNL YYLPQQSSSS SGGAVKASAY DQGSTCNNWV PAAVPTIAPR SNNMAVCHGA  720
STFTVWNDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29929.m004537
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015572170.10.0AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN21e-152BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLB9RM330.0B9RM33_RICCO; Protein AINTEGUMENTA, putative
STRINGXP_002514802.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-122AP2 family protein