PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29929.m004534 | ||||||||
Common Name | RCOM_1077400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | FAR1 | ||||||||
Protein Properties | Length: 256aa MW: 29281.2 Da PI: 7.8994 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.8 | 3.1e-22 | 72 | 163 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY +YA +GF +r++++++ +g+++++t+vCs+eg++++++++ ++ + r + r+gCka++ kk++ ++kw +++l +eH+H+l+ 29929.m004534 72 EFYGKYAMCMGFLTRINRTSQ--LDGSVISKTLVCSREGFQRPNNRNdmtYIRSPKARGSIRVGCKARVSFKKKQdSEKWFISNLIKEHTHPLN 163 6***************97655..5********************999665556777999***************999***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-19 | 72 | 163 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MLSCILNSFV AVDSERNPDI ATKRNNSIDS NPQISNDCGA NESNVDAVSE PESTLDEPYV 60 GQKFESEAAA HEFYGKYAMC MGFLTRINRT SQLDGSVISK TLVCSREGFQ RPNNRNDMTY 120 IRSPKARGSI RVGCKARVSF KKKQDSEKWF ISNLIKEHTH PLNDSVFQKA RISQVSGDDK 180 RIHELTQELM MERKRSASLR EFINLLFNHI EEHTQGLSEK IQYIAEKLNL YIVMLNEAMR 240 KISPVPYNFF PFLELA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29929.m004534 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015572119.1 | 1e-171 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
TrEMBL | B9RM30 | 0.0 | B9RM30_RICCO; Uncharacterized protein | ||||
STRING | XP_002514799.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 6e-44 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | 29929.m004534 |