PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29923.m000827
Common NameRCOM_1070220
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family AP2
Protein Properties Length: 473aa    MW: 52632.4 Da    PI: 6.9476
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29923.m000827genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.41.5e-12247297155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV+ +k  grW+A+   +   g +k+ +lg f+++ eAa+a++ a+ k +g
  29923.m000827 247 SKYRGVTLHK-CGRWEARMGQF--HG-KKYMYLGLFDSEVEAARAYDMAAIKCNG 297
                    89********.7******6663..33.6**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.957125212IPR001471AP2/ERF domain
SMARTSM003804.2E-14167218IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-11171212IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-8173213IPR016177DNA-binding domain
CDDcd000181.54E-13177214No hitNo description
CDDcd000184.51E-25247307No hitNo description
PfamPF008471.8E-8247297IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-17247306IPR016177DNA-binding domain
PROSITE profilePS5103215.725248305IPR001471AP2/ERF domain
SMARTSM003809.0E-31248311IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-15248305IPR001471AP2/ERF domain
PRINTSPR003676.1E-6249260IPR001471AP2/ERF domain
PRINTSPR003676.1E-6287307IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MLDLNLDIIS SDSSCHSHNS KRKDRSKNDY MVIPEVPVVP IEEDSGTSNS SIIINTEEAL  60
TNPGDENSSN NIHNSAFIFD ILKKEKADDD SNSNDNAFRE SKSNPHQYFT TQQLFPERSQ  120
LDLDLKSGLA MIRPQQHQWL KLSEMDSSAD GGEAELRIVQ QKQQQMRKSR RGPRDCGKQV  180
YLGGFDTALS AARAYDRAAI KFRGVDADIN FTLSDYEEDM KQMKNLGKEE FVHILRRQSN  240
GFARGSSKYR GVTLHKCGRW EARMGQFHGK KYMYLGLFDS EVEAARAYDM AAIKCNGREA  300
VTNFEPSVYG GGGMVFDPTG NGHNLDLSLG IAVPRNDSKG NSKHVRDYCY FPCTNDREVP  360
NNERPMVESA ASSAPKGVLH ENSLPLASKN RPTLSGIFSG LLPPGDKERF INKRVEADSS  420
QKTSSWLWKI NGNNNNNNNN VATNSKISVA ASSGFASSSD SHCFFNNLSL QPE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29923.m000827
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025013969.10.0floral homeotic protein APETALA 2 isoform X1
SwissprotB8AXC37e-78AP21_ORYSI; APETALA2-like protein 1
TrEMBLB9SD530.0B9SD53_RICCO; DNA binding protein, putative
STRINGXP_002523922.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.25e-73AP2 family protein