PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29917.m001977
Common NameRCOM_1063330
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 316aa    MW: 36507.2 Da    PI: 6.6517
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29917.m001977genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.1e-1875121148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd llv++vk++G + W+ Ia+++  gR +kqc++rw+++l
    29917.m001977  75 KGQWTPEEDCLLVQLVKEYGIKKWSEIAKMLE-GRVGKQCRERWHNHL 121
                      799*****************************.*************97 PP
2Myb_DNA-binding54.42.8e-17127169145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W +eEde l++a+k+ G++ W+ Ia++++ gRt++ +k++w+
    29917.m001977 127 KDAWDEEEDEVLIEAHKEIGNR-WAEIAKRLP-GRTENTIKNHWN 169
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.17870125IPR017930Myb domain
SuperFamilySSF466897.11E-3273168IPR009057Homeodomain-like
SMARTSM007179.9E-1774123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2876128IPR009057Homeodomain-like
PfamPF139212.1E-1878135No hitNo description
CDDcd001677.02E-1578121No hitNo description
SMARTSM007172.0E-15126174IPR001005SANT/Myb domain
PROSITE profilePS5129420.534126176IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-21129174IPR009057Homeodomain-like
CDDcd001674.83E-11129172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MTEAHNSFDQ NQMYECLNFE DMGLIMMSGA NKVTADEVSC ITADNGYNKK VDQKKDKKSQ  60
VKKDGKVHKK SHVIKGQWTP EEDCLLVQLV KEYGIKKWSE IAKMLEGRVG KQCRERWHNH  120
LRPDIRKDAW DEEEDEVLIE AHKEIGNRWA EIAKRLPGRT ENTIKNHWNA TKRRQFSRRK  180
SKDSNSKSTL LQSYIKTLTS SPLSSSTTTT GKKADHVKIN LQEHRTMKES PSVSSSQVPN  240
YYDDHSHEEL MFDEGYGNFV SLLDHEMPCA SVVDESNLMG FEMSMEMDSL MMMKDAGEAK  300
KEMDLLEMII QQTQYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-46731762105C-Myb DNA-Binding Domain
1msf_C2e-46731762105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15269QKKDKKSQVKKDGKVHKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29917.m001977
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521444.20.0transcription factor MYB98
SwissprotQ9S7L21e-71MYB98_ARATH; Transcription factor MYB98
TrEMBLB9S6250.0B9S625_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002521444.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-62myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]