PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29917.m001969
Common NameRCOM_1063050
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 854aa    MW: 93941.5 Da    PI: 7.8994
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29917.m001969genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.7e-18325425199
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                    f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +gr+W +++++  +++s++yvl+ G     +  +L++gD+v+F++ +  e++l
  29917.m001969 325 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISHPEGLPLKVQDAKGREWIFQFRFwpNNNSRMYVLE-GVTPCIQNMRLQAGDIVTFSRLE-PEGKL 418
                    89**************************555666777***************9989999999***9.********************766.67777 PP

                    EEEEE-S CS
             B3  93 vvkvfrk 99 
                    v++++++
  29917.m001969 419 VMGFRKT 425
                    7777654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0135904299IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.103.7E-30321427IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-20322425IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-22323424No hitNo description
SMARTSM010191.9E-20325426IPR003340B3 DNA binding domain
PROSITE profilePS5086311.335325426IPR003340B3 DNA binding domain
PfamPF023622.0E-15325424IPR003340B3 DNA binding domain
PROSITE profilePS5105014.012536586IPR011124Zinc finger, CW-type
PfamPF074961.2E-11541583IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MAASAPTSSV SATSKKCFNS DCTEFKIRKG WRLRAGDFAE LCDRCASMFE EGRFCDTFHL  60
NATGWRCCES CGKRVHCGCI VSNNAFMLLD AGGIECMACA RKNIVLSSNT PWPPPLFYNT  120
PLSERFKDLS VKGLGQLAGS GPVPWRQAPS LFNSPISHSE LQPRALYEID RLATGERSSA  180
PALEKGRMDD FSERLINGSL KLGAGIEEKP GSCLGIPHQP SSLREDPSTA QRMVIPFASL  240
NEPNISAVSG TPLRQPAPPP SLPKQFHGNL HNGVDSSIDT HIRNGRPRVD ARARSQLLPR  300
YWPRFTDEEL QQISGNSNSV ITPLFEKMLS ASDAGRIGRL VLPKKCAEAY FPPISHPEGL  360
PLKVQDAKGR EWIFQFRFWP NNNSRMYVLE GVTPCIQNMR LQAGDIVTFS RLEPEGKLVM  420
GFRKTSNVPS SDQAELADSS PWSKVDKSGY IAKEVLEAKS SIRKRKSSTL GSKSKRLRIE  480
NEDMIELKLT WEEAQGLLRP PPDHIPSVLV IEGYEFEEYE DAPILGKPTI FATDNSGQKV  540
QWVQCEDCFK WRKLPANADL PSKWTCTGNS WDPERSLCSA TQELTAEQIE DLLPSCNIVA  600
SKKLKAAKQE TENVEALEGL DTLANLAILG ENEALPASSQ ATTKHPRHRP GCSCIVCIQP  660
PSGKGPKHKQ TCTCNVCQTV KRRFKTLMMK REKKQSEKEA ETTRKKQQQP LPEKLLDDDP  720
SPSSNTGSSS PNKKKVFSEG SDDDPNRMKS STSPFKGQID LNIQPEREEE LSPGSDSGSM  780
MKMIQGATER YLRQQLLLSS DGDTVSAGKQ ALAGHAMGEE VGNGITLGSS LQDPDKDNST  840
TFSTKVPASS PAIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C8e-653034271125B3 domain-containing transcription repressor VAL1
5yzz_C8e-653034271125B3 domain-containing transcription repressor VAL1
5z00_C8e-653034271125B3 domain-containing transcription repressor VAL1
5z00_G8e-653034271125B3 domain-containing transcription repressor VAL1
5z00_K8e-653034271125B3 domain-containing transcription repressor VAL1
5z00_M8e-653034271125B3 domain-containing transcription repressor VAL1
6j9a_A7e-653034272126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29917.m001969
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576195.10.0B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLB9S6170.0B9S617_RICCO; Transcription factor, putative
STRINGXP_002521436.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-172high-level expression of sugar-inducible gene 2