PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29916.m000544

Common Name

RCOM_1062060

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

GRAS

Protein Properties

Length: 787aa MW: 86369.7 Da PI: 6.7951

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29916.m000544	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	315.1	1.6e-96	426	786	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++L+++Ae v +g+++ aq +Larl+++ sp g+p++R+a+yf+eAL+ l+ ++ + +lpp++ ++ +++ +l a+k+fsevsP+++f ++t 29916.m000544 426 LDQLYKAAELVGTGNFSHAQGILARLNQQLSPIGKPLHRAAFYFKEALQLLLLM-NNNPVTSLPPRSPTPFDVIFKLGAYKVFSEVSPLIQFVNFT 520 679***********************************************98.555556799999999********************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle..dlel 191 +Nqa+lea+++++r+HiiDfdi+ G+QW++++q+L R++g+psl+iT+++sp++++ e+ ++e+L++fA+e+g++fe +v+ ++le + +l 29916.m000544 521 CNQALLEALSEADRIHIIDFDIGFGAQWASFMQELP-RNRGAPSLKITAFASPSTHHPVEVLLMRENLTQFANEIGISFELDVINFDSLEqsCYSL 615 *******************************6.789***************************************9777655115678 PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 +r k++Ea+aV++ + + +++++l+s +L++vk+lsPk+vv ++ d+++ +F +++l+al+ + l++sl+a +s++ +k+E+ 29916.m000544 616 PIFRSKENEAIAVHFPV--WSASNQPAALPS----LLRFVKQLSPKIVVSLDRG-DRTDLPFPQHILHALQSHILLLESLDAV-NVASDAVNKIEK 703 8889999***999..556667888888....************995.778******************665.56999*** PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +ll+++i++ v + ++ ++ +W+ + +aGF+pv++s+++++qa++++++++++g++ve++++slvl+W++r L+s+SaWr 29916.m000544 704 FLLQPRIESTVLGRLRA----PDKMPTWKTIFASAGFSPVTFSNFTETQAECVVKRTPVRGFHVEKRQASLVLCWQRRDLISASAWR 786 ********99998....999************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.146	399	766	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.4E-94	426	786	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 787 aa Download sequence Send to blast
MELERGDVDN MELKKKRKNK GKGGLDIVDI ATFASICAQQ ETWKQKQQLQ QQEVNSFAST 60 EPTSVLHMRR SPSPPTSAST LSSSFNNGGG GGNSTDNTTT TATEKVVNPL NNERKDEWAT 120 ELQPIPSGLE ISAGERCGVG LEDWENMFSE PNQEQSLLRW IAGDVDESFG LRQLLQGGNN 180 PGEFDGNGTA GLGIVDHAPG FEAMTAIASG VSSIATNLSS FPTSGYSSIT SGSNNGNGKL 240 GSCLVSPPSS SFTSGSVNFI SVGLGSNSSS NCSIQNPIFG SSPSSVSLPG ALPPGMVYHH 300 NLQHQIEAPE EKPQILNPQV LMNQQQSQNS NFFLPLPFPQ QENHLLQPQT KRHNSGGMDP 360 MPQMISKLPF SDPGYELLLR KQQHMGFQQG VHFLHPHLQQ KPLVVKKEVG GGHQQQQQAQ 420 HQHALLDQLY KAAELVGTGN FSHAQGILAR LNQQLSPIGK PLHRAAFYFK EALQLLLLMN 480 NNPVTSLPPR SPTPFDVIFK LGAYKVFSEV SPLIQFVNFT CNQALLEALS EADRIHIIDF 540 DIGFGAQWAS FMQELPRNRG APSLKITAFA SPSTHHPVEV LLMRENLTQF ANEIGISFEL 600 DVINFDSLEQ SCYSLPIFRS KENEAIAVHF PVWSASNQPA ALPSLLRFVK QLSPKIVVSL 660 DRGDRTDLPF PQHILHALQS HILLLESLDA VNVASDAVNK IEKFLLQPRI ESTVLGRLRA 720 PDKMPTWKTI FASAGFSPVT FSNFTETQAE CVVKRTPVRG FHVEKRQASL VLCWQRRDLI 780 SASAWRC

Sequence ? help Back to Top

Protein Sequence Length: 787 aa Download sequence Send to blast

MELERGDVDN MELKKKRKNK GKGGLDIVDI ATFASICAQQ ETWKQKQQLQ QQEVNSFAST  60
EPTSVLHMRR SPSPPTSAST LSSSFNNGGG GGNSTDNTTT TATEKVVNPL NNERKDEWAT  120
ELQPIPSGLE ISAGERCGVG LEDWENMFSE PNQEQSLLRW IAGDVDESFG LRQLLQGGNN  180
PGEFDGNGTA GLGIVDHAPG FEAMTAIASG VSSIATNLSS FPTSGYSSIT SGSNNGNGKL  240
GSCLVSPPSS SFTSGSVNFI SVGLGSNSSS NCSIQNPIFG SSPSSVSLPG ALPPGMVYHH  300
NLQHQIEAPE EKPQILNPQV LMNQQQSQNS NFFLPLPFPQ QENHLLQPQT KRHNSGGMDP  360
MPQMISKLPF SDPGYELLLR KQQHMGFQQG VHFLHPHLQQ KPLVVKKEVG GGHQQQQQAQ  420
HQHALLDQLY KAAELVGTGN FSHAQGILAR LNQQLSPIGK PLHRAAFYFK EALQLLLLMN  480
NNPVTSLPPR SPTPFDVIFK LGAYKVFSEV SPLIQFVNFT CNQALLEALS EADRIHIIDF  540
DIGFGAQWAS FMQELPRNRG APSLKITAFA SPSTHHPVEV LLMRENLTQF ANEIGISFEL  600
DVINFDSLEQ SCYSLPIFRS KENEAIAVHF PVWSASNQPA ALPSLLRFVK QLSPKIVVSL  660
DRGDRTDLPF PQHILHALQS HILLLESLDA VNVASDAVNK IEKFLLQPRI ESTVLGRLRA  720
PDKMPTWKTI FASAGFSPVT FSNFTETQAE CVVKRTPVRG FHVEKRQASL VLCWQRRDLI  780
SASAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-31	414	785	8	378	Protein SCARECROW
5b3h_A	2e-31	414	785	7	377	Protein SCARECROW
5b3h_D	2e-31	414	785	7	377	Protein SCARECROW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	19	LKKKRKNK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29916.m000544

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015580706.1	0.0	scarecrow-like protein 27
TrEMBL	B9SSH1	0.0	B9SSH1_RICCO; Uncharacterized protein
STRING	XP_002528940.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13269	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-120	GRAS family protein

Link Out ? help Back to Top
Phytozome	29916.m000544