PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29912.m005337 | ||||||||
Common Name | RCOM_1047040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bHLH | ||||||||
Protein Properties | Length: 502aa MW: 56140.5 Da PI: 9.4776 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.2 | 2.6e-12 | 318 | 362 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR++iN++fe Lr+llP+ K +Ka++L+++ eY+ L 29912.m005337 318 HMISERKRREKINESFEALRKLLPPE-----AKKDKASVLTRTREYLTLL 362 8899*********************6.....599************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.173 | 313 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-17 | 314 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.67E-12 | 315 | 367 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-15 | 316 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.7E-10 | 318 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-12 | 319 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MAFINNQPYR ELSQSELLRL TSVAVQRQFY QINMENAMMS WFSEYSIPQQ SLSQLRELSQ 60 ALDPNPPSSS SSSLRSLDSP DSSSFMFNMP TTSNIAEIPL EVRPLQPIPS ASSSIQQVLQ 120 FLQPTQSTTS SVQPAMQSFQ QVPSTTTSPL RQAMQPLQQV PSTTTSPVHQ QAMQSLPLIP 180 SASTSPHQQA MQSLPLIPSA STSPHQQAMQ AFALSRNIQL PSQESEDAAM TRAILAVLTS 240 PSSSTSSSTP NLPYTHYHGV SQQRGSAFKS YLAPRIPMRA SLHRQNLLKR SITYYRNLNI 300 ARREHMTANR PTTTQLHHMI SERKRREKIN ESFEALRKLL PPEAKKDKAS VLTRTREYLT 360 LLKTQVAELS QRNQQLEAEL LPAAIEAHAG EVIAENQQSG SWEGRVEVRI TNVSESTSED 420 ERIINLLIVL RGECPVSDFV IRILEFLKQV NNANLMSVDA NTSRGASRSL NRVILRLRIE 480 GNEWDEAAFQ EAVRRVVADL AQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 321 | 326 | ERKRRE |
2 | 322 | 327 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29912.m005337 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015571697.1 | 0.0 | putative transcription factor bHLH041 | ||||
TrEMBL | B9RK78 | 0.0 | B9RK78_RICCO; DNA binding protein, putative | ||||
STRING | XP_002514122.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4150 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 7e-58 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 29912.m005337 |