PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29912.m005288
Common NameLOC8272511, RCOM_1046050
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NF-YA
Protein Properties Length: 327aa    MW: 36093.2 Da    PI: 9.4606
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29912.m005288genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.96e-32181237158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    d p+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh hAl+R RgsgGrF
  29912.m005288 181 DGPIYVNAKQYHGILRRRQSRAKLEARNKL-VKARKPYLHESRHLHALNRVRGSGGRF 237
                    57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575122No hitNo description
SMARTSM005211.3E-35179240IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.172180240IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.2E-27183237IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.2E-24183205IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860185205IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.2E-24214237IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAVRIQNLPK KNYGQVHFTF SCPSWWNSNE QQSPRFLSKN ISFKVESTPQ LNREAKHLGL  60
QHLDQDSSSA QSVGQSHNEV GAVGGTSSED QCISSESGED ESCGKNAEGR MKPVLLFSAP  120
EISRNPSQTD NSRSMAHAPV PYADHYFGEL FTPYGPKDIM GSQILGMTAA RVALPLDLAD  180
DGPIYVNAKQ YHGILRRRQS RAKLEARNKL VKARKPYLHE SRHLHALNRV RGSGGRFLSK  240
NKVQQLDANA TSSRQGVSDS ILHLHSKNET SQLENCPYSR TLKSCTDVTS VSNGDAIYRQ  300
QDHWFSGTAV RFGGGMQTSG GHMYSGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-20181239260NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29912.m005288
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514074.10.0nuclear transcription factor Y subunit A-3 isoform X2
RefseqXP_015571750.10.0nuclear transcription factor Y subunit A-3 isoform X2
RefseqXP_015571751.10.0nuclear transcription factor Y subunit A-3 isoform X2
RefseqXP_025012236.10.0nuclear transcription factor Y subunit A-3 isoform X2
TrEMBLB9RK300.0B9RK30_RICCO; Nuclear transcription factor Y subunit A-3, putative
STRINGXP_002514074.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-45nuclear factor Y, subunit A3