PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29908.m006226

Common Name

LOC8268383, RCOM_1038720

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

ZF-HD

Protein Properties

Length: 270aa MW: 29019.1 Da PI: 7.5187

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29908.m006226	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	105	4.5e-33	65	119	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 vrY+eClkNhA+++GghavDGCgEfm++ geegt +alkCaAC+CHRnFHR+e++ 29908.m006226 65 LVRYRECLKNHAVNMGGHAVDGCGEFMAA-GEEGTLDALKCAACNCHRNFHRKETD 119 589***********************9.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.5E-30	66	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.8E-29	67	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	6.0E-23	67	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.612	68	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.97E-19	194	268	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.5E-31	196	269	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.9E-25	207	263	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MDFEEHEDQE EEMEMAIPPG YHHHDTISNS VRPKMGSATG GGGGEGGSTI ATAAATTTTT 60 NTRKLVRYRE CLKNHAVNMG GHAVDGCGEF MAAGEEGTLD ALKCAACNCH RNFHRKETDG 120 IGEGIYQHHH HQQHHPQFSP YYRAPPPAGY LHLTPPPQHR PLALPAASAG GGGYSRDLED 180 ISNPSSSGGG GGGGGGGGSG GGSGGSKKRF RTKFSQEQKD KMLDFSERLG WRIQKHDEAA 240 VEQFCSDNGI KRQVLKVWMH NNKHTLGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-27	206	265	16	75	ZF-HD homeobox family protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	198	SGGGGGGGGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29908.m006226

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002514009.1	0.0	zinc-finger homeodomain protein 2
Swissprot	Q6YXH5	4e-78	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	B9RJU0	0.0	B9RJU0_RICCO; Transcription factor, putative
STRING	XP_002514009.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-71	homeobox protein 22

Link Out ? help Back to Top
Phytozome	29908.m006226
Entrez Gene	8268383

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]