PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29908.m006193 | ||||||||
Common Name | LOC8274127, RCOM_1032360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | C2H2 | ||||||||
Protein Properties | Length: 441aa MW: 49033.6 Da PI: 9.5203 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.1 | 7.1e-06 | 207 | 229 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +CpdCg+ F +nL+ H+ + H 29908.m006193 207 SCPDCGEIFVKAENLELHQAVrH 229 8******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.4E-4 | 205 | 225 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 206 | 229 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.954 | 206 | 234 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 2.97E-23 | 231 | 440 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.1E-15 | 232 | 439 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MAKPKHSRKP TKDINQNQHK KTEKPPSWIV VRGLFPCKDL QTHQQQQQQQ QQQLKQEQQQ 60 QQKQEHQQHK KEKKHHQNRE QASEESSKKC KKIKCSGSLC SNTKVMHRPE TASPELQRKR 120 ASMALTSSSN GASSRSMKAP LSEISNGVLS STNSSLSASS NSSSMSNAGS FRGMPFRRFS 180 GCYECRMVVD PVLGFTRDPS LRSSICSCPD CGEIFVKAEN LELHQAVRHA VSELGPEDTS 240 KNIVEIIFQS SWLKKQAPVC QIDRILKVHN TQRTISKFEE YRDSIKAKAT KLPKKYPRCI 300 ADGNELLRFY CTSFTCSLGL NGSNNLCNSI PHCNVCSIIK SGFKESSTGV VNGNGILTTA 360 TSGKAHDEAA ISEDKSDGNS ERRAMLVCRV IAGRVKKSME GNMEEYDSVA GAVGVYSNLD 420 ELYVFNPKAI LPCFVVIYSG F |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29908.m006193 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002513814.1 | 0.0 | uncharacterized protein LOC8274127 | ||||
TrEMBL | B9RJ95 | 0.0 | B9RJ95_RICCO; Nucleic acid binding protein, putative | ||||
STRING | XP_002513814.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8473 | 21 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 6e-95 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | 29908.m006193 |
Entrez Gene | 8274127 |