PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29908.m006098
Common NameLOC8281710, RCOM_1037580
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 338aa    MW: 38185.8 Da    PI: 6.0054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29908.m006098genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13138189155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h ++Er+RR+r+N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  29908.m006098 138 QRMTHIAVERNRRKRMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 189
                    79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.03E-14136193No hitNo description
SuperFamilySSF474594.32E-17137208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.555137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-13137193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10138189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10143194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MALDAVVYPQ DPFCYYGYKD CYGGGGHWGY DIALQEDDKA FLGILEDNNN NIEQQQATGF  60
QANWDSSSPP IIQRHAKDYH QWEYPNSSPE TCTTDNYQSL SADVLHPTSE PPPPPTTTGR  120
RKRRRTKNPK DKEEIENQRM THIAVERNRR KRMNEYLAVL RSLMPPSYVQ RGDQASIIGG  180
AINFVKELEQ LLQTMEGHKK TKQQQPDASG FSSSPFADFF TFPQYSTRNP PTTAEESLAV  240
ADQNQWAMAD IEVTMVENHA NLKILSKRRP RKLLKVVAGL QGLRLSVLHL NVTTADQMVL  300
YSVSVKIEEG CLLNTVDDIA AAVNQVLHTI HEEEATFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120124RKRRR
2120125RKRRRT
3120127RKRRRTKN
4138149RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap29908.m006098
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513985.10.0transcription factor bHLH96
SwissprotQ9C7T43e-98BH096_ARATH; Transcription factor bHLH96
TrEMBLB9RJR60.0B9RJR6_RICCO; DNA binding protein, putative
STRINGXP_002513985.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-93bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]