PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29908.m005982
Common NameRCOM_1033800
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MIKC_MADS
Protein Properties Length: 347aa    MW: 39506.6 Da    PI: 5.3938
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29908.m005982genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885.1e-28958150
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                   krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  29908.m005982  9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
                   79********************************************9997 PP
2K-box26.33.1e-101221901179
          K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                    +++ e+lqqe++ L+++i+  ++++R +  + L+  sl eL++ e++L + l+++ ++K+ ll +++++
  29908.m005982 122 NSDVEELQQEVTSLQQQIQIAEEQIRIYEPDPLKLPSLGELESCEKNLVDTLTRVMQRKEFLLSNHLSY 190
                    67889**********************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.941161IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-30283IPR002100Transcription factor, MADS-box
CDDcd002655.75E-37275No hitNo description
PRINTSPR004043.8E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-6124189IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0055114Biological Processoxidation-reduction process
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR  60
KRIEDVFARY VNLPDQEREH ALYPERSRNP MFYLMQYLLR TLHQLKSEND IALQLANPTA  120
INSDVEELQQ EVTSLQQQIQ IAEEQIRIYE PDPLKLPSLG ELESCEKNLV DTLTRVMQRK  180
EFLLSNHLSY DPSSMQGIPN SFENDVIGWL PDGSQNHAQM LPTPAPQIFD TSASLNNLRD  240
ISSTMYDPLL QGSSSNGETH RMGECHVTNP NDGNFSPWPQ LYTSTGLNST AISSSLYPHQ  300
LQHGMVGPNI PDMMPREQME IPMDAEHVHM ENVAANYENN KVPRLNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-16158158Myocyte-specific enhancer factor 2B
1tqe_Q8e-16158158Myocyte-specific enhancer factor 2B
1tqe_R8e-16158158Myocyte-specific enhancer factor 2B
1tqe_S8e-16158158Myocyte-specific enhancer factor 2B
3mu6_A5e-16270168Myocyte-specific enhancer factor 2A
3mu6_B5e-16270168Myocyte-specific enhancer factor 2A
3mu6_C5e-16270168Myocyte-specific enhancer factor 2A
3mu6_D5e-16270168Myocyte-specific enhancer factor 2A
5f28_A9e-16181182MEF2C
5f28_B9e-16181182MEF2C
5f28_C9e-16181182MEF2C
5f28_D9e-16181182MEF2C
6c9l_A8e-16158158Myocyte-specific enhancer factor 2B
6c9l_B8e-16158158Myocyte-specific enhancer factor 2B
6c9l_C8e-16158158Myocyte-specific enhancer factor 2B
6c9l_D8e-16158158Myocyte-specific enhancer factor 2B
6c9l_E8e-16158158Myocyte-specific enhancer factor 2B
6c9l_F8e-16158158Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29908.m005982
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571470.10.0agamous-like MADS-box protein AGL104
SwissprotQ9LM461e-126AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLB9RJF30.0B9RJF3_RICCO; Mads box protein, putative
STRINGXP_002513872.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-119AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]