PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29908.m005963 | ||||||||
Common Name | LOC8263004, RCOM_1033280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bZIP | ||||||||
Protein Properties | Length: 310aa MW: 35147.3 Da PI: 5.7368 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43.2 | 8.3e-14 | 240 | 284 | 5 | 53 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 +r++r++kNRe+A rsR+RK+a++ +Le +v +L++ N+ Lk +lk 29908.m005963 240 RRQKRMIKNRESAARSRARKQAYTNQLEHEVFQLQKTNSWLK----KLK 284 69************************************8777....333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.3E-9 | 236 | 304 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.898 | 238 | 282 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.38E-10 | 240 | 283 | No hit | No description |
CDD | cd14707 | 2.58E-22 | 240 | 286 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.1E-12 | 240 | 283 | No hit | No description |
Pfam | PF00170 | 1.2E-12 | 240 | 282 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 243 | 258 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MASPDRAQEQ QFPCNITFDQ LGNVGKLLST MKLDEFLKNV ISVEEAQLLQ NVNPSSSSSS 60 SSSSSARPFF LGDFDLNNGM LSKKPVDDAW KDIDNQEHVN VLANQSIQQR LGETSLEDFL 120 VRAGVVNIGN QNAMLDPHQP IMDINSMVVV SQQEDWLQLQ RTAVQQEQQQ QQHQMTVLDS 180 DFHVSESGYE NPVVDVGYAD NQLAITMPMP AISATSSESQ AVAEKKRRYS DEVMEKTIER 240 RQKRMIKNRE SAARSRARKQ AYTNQLEHEV FQLQKTNSWL KKLKEQERLL SSNPVAPPRY 300 QLRRTSSASF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29908.m005963 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002513853.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 3 isoform X2 | ||||
TrEMBL | B9RJD4 | 0.0 | B9RJD4_RICCO; DNA binding protein, putative | ||||
STRING | XP_002513853.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1320 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41070.3 | 5e-39 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | 29908.m005963 |
Entrez Gene | 8263004 |