PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29904.m002952

Common Name

LOC8280672, RCOM_1019810

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

G2-like

Protein Properties

Length: 303aa MW: 32937.3 Da PI: 6.6254

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29904.m002952	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109	2.5e-34	38	92	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl 29904.m002952 38 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 92 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.612	35	95	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-33	35	94	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-17	37	94	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-24	38	93	IPR006447	Myb domain, plants
Pfam	PF00249	9.2E-9	40	91	IPR001005	SANT/Myb domain
Pfam	PF14379	7.4E-27	135	181	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MYSAIHSLPL DGHGDFQGSL DGTNLPGDAC LVLTTDPKPR LRWTAELHER FVDAVTQLGG 60 PDKATPKTIM RTMGVKGLTL YHLKSHLQKY RLGRQSCKES NENSKDASVA ESQDTGSSTS 120 TSSRMIAQDV NDGYQVTEAL RVQMEVQRRL HEQLEVQRRL QLRIEAQGKY LQSILEKACK 180 ALNDQAAVSA GLEAAREELS ELAIKVSNEC QGIVPADNMK MPSLSELAVA LESKSTSNLP 240 ARIGDCSVES CLTSTGSPVS PMGVGSHTAS IKKRPRPIFG NGDSLPLEGS MRQEVEWMMG 300 NIG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	276	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29904.m002952

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002518104.1	0.0	protein PHR1-LIKE 3 isoform X1
Swissprot	Q94A57	1e-140	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	B9RWI5	0.0	B9RWI5_RICCO; Transcription factor, putative
STRING	XP_002518104.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13367	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-127	G2-like family protein

Link Out ? help Back to Top
Phytozome	29904.m002952
Entrez Gene	8280672

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]