PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29889.m003372
Common NameRCOM_1002900
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family CAMTA
Protein Properties Length: 999aa    MW: 112443 Da    PI: 7.3803
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29889.m003372genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.22.1e-55281443118
           CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 
                    +e k+rwl+++ei++i++n++ ++l+ e++ rp+ gsl+L++rk +ryfrkDG++w+kkkdgktvrE+hekLK g+v+vl+cyYah+e+n++fqrr
  29889.m003372  28 EEsKHRWLRPNEILEIFNNYQLFKLSPEPPVRPSAGSLFLFDRKALRYFRKDGHNWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNNNFQRR 123
                    4559******************************************************************************************** PP

           CG-1  98 cywlLeeelekivlvhylevk 118
                    cyw+L+ +le+ivlvhy+evk
  29889.m003372 124 CYWMLDGKLEHIVLVHYREVK 144
                    ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.96823149IPR005559CG-1 DNA-binding domain
SMARTSM010763.5E-7526144IPR005559CG-1 DNA-binding domain
PfamPF038596.1E-4930142IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.1E-5437527IPR013783Immunoglobulin-like fold
PfamPF018331.0E-4439524IPR002909IPT domain
SuperFamilySSF812968.05E-16439525IPR014756Immunoglobulin E-set
CDDcd002041.09E-13605733No hitNo description
SuperFamilySSF484036.53E-16618736IPR020683Ankyrin repeat-containing domain
PfamPF127964.3E-8620704IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.21629735IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.5E-16630739IPR020683Ankyrin repeat-containing domain
SMARTSM002482.3E-4674703IPR002110Ankyrin repeat
PROSITE profilePS5008811.114674706IPR002110Ankyrin repeat
SuperFamilySSF525402.2E-9839899IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.19848870IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.736849878IPR000048IQ motif, EF-hand binding site
PfamPF006120.0021850869IPR000048IQ motif, EF-hand binding site
SMARTSM000150.015871893IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.755872900IPR000048IQ motif, EF-hand binding site
PfamPF006120.0011875893IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.98953981IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 999 aa     Download sequence    Send to blast
MADTRRYLPN QPLVSIFVFH GYLKQILEES KHRWLRPNEI LEIFNNYQLF KLSPEPPVRP  60
SAGSLFLFDR KALRYFRKDG HNWRKKKDGK TVREAHEKLK AGSVDVLHCY YAHGEDNNNF  120
QRRCYWMLDG KLEHIVLVHY REVKEGYRSG VSHLLSEPSA QVDSSQPSSA PSLAQTASPA  180
FTGQTSYASS PNRVDWNGQT LSSESEDVDS RDNLRASPLT EPVYGSLLGT DVEGFPMISR  240
NPPESWFIGS KFGQRTESSL WPEIPSSSKS ADHVQDQKSC VGEHSGADFI THKLRDPRLD  300
SNGPDTVTIG GRLISNMDDD AVAAVHQKII QEHDFNLIPP RFLNFSGTQN DDYFLQPEDG  360
SANDSELGEL KKLDSFGRWM DKEIGGDCDD SLMASDSGNY WNTLGAENEE KEVSSLSHHM  420
QLDIESLGPS LSQEQLFSIH DFSPDWAYSG VETKVLIIGT FLGSKKFSSE RKWGCMFGEI  480
EVSAEVLTNN VVKCQAPLHV SGRVPFYITC RNRLACSEVR EFEYRDNPSS IASLSVRSVQ  540
QEELQLQVRL AKLLYLGPER KWLNCSSEGC NKCKRLRSTL YSIRNYSNKD YTRIREDCTV  600
SEVNCTNSRD ELIHSLLKDK LCEWLVCKVH EGKGLDVLDD EGQGVMHLAA SLGYEWAMGL  660
IVAVSNNPNF RDAQGRTALH WASYFGREET VIALVSLGVD PTAVDDPTPA FPGGRVAADL  720
ASNQGHKGIA GYLAEAFLTR QLSSLNINEN ATNSVDATIA AEQATELAAA LVALPSNGRV  780
DDQLSLKGSL AAVRKSALAA ALIQATFRSY SFQYRQLPKG TDDSEVSLDL AALGSLNKDQ  840
RSRHFEDYLH SAAVKIQQKY RGWKGRKEFL KIRNRIVKIQ AHVRGRKVRK QYKKVIWSVS  900
IVEKAILRWR RKRSGLRGFH VEKTTGDVTT ETDRSDEYEF LRISRKQKYA GVEKALARVQ  960
SMARDPAARD QYMRLVTKSE KLKMSDEGIS ISRQDEYLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap29889.m003372
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574725.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLB9RZY10.0B9RZY1_RICCO; Calmodulin-binding transcription activator (Camta), plants, putative
STRINGXP_002519300.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128892526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein