PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29889.m003321
Common NameRCOM_1000990
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 351aa    MW: 38816.9 Da    PI: 6.6049
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29889.m003321genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.41.5e-33188246159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDgy+WrKYGqK vk+s++prsYYrCtsagC vkk+vers+ed+++v++tYeg+H+h+
  29889.m003321 188 LDDGYRWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSEDNTIVVTTYEGQHTHP 246
                    59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381307.8E-9923349IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.801.7E-35173248IPR003657WRKY domain
SuperFamilySSF1182901.22E-29180248IPR003657WRKY domain
PROSITE profilePS5081133.12183248IPR003657WRKY domain
SMARTSM007749.4E-40188247IPR003657WRKY domain
PfamPF031065.0E-27189246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MIKIGNSSAA VAANSTTFIS ELQEEMPSIN VSLPLSSAAS SITTTSIFDM MMPCDYMGEK  60
GYSLGFLDLL DGNNQDFGAT SSLFDWFQFQ TPILPDHHQQ QQQPLPSPAS TVPETSEVLN  120
TPATPNSSSI SSSSNEAGID SSSQVKAGDE DEQDQDKNKK QLKPKKKNQK RQREPRFAFM  180
TKSEVDHLDD GYRWRKYGQK AVKNSPYPRS YYRCTSAGCG VKKRVERSSE DNTIVVTTYE  240
GQHTHPSPVT PRGSIGFLPD SSAFGAANSS FVIPQPRPYQ QQQQQQHAYM YSSSPSLNIT  300
TSTSSSINPP FSPSFLHHER RFSPSPASLV RDHGLLQDIV PSQMRKDATE E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-271812481077Probable WRKY transcription factor 4
2ayd_A4e-27176248274WRKY transcription factor 1
2lex_A4e-271812481077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29889.m003321
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519250.20.0probable WRKY transcription factor 48
SwissprotQ9FGZ42e-61WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLB9RZT10.0B9RZT1_RICCO; WRKY transcription factor, putative
STRINGXP_002519250.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.19e-52WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]