PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29889.m003285

Common Name

RCOM_1000430

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

GRAS

Protein Properties

Length: 576aa MW: 64817.8 Da PI: 5.1494

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29889.m003285	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	277.8	3.2e-85	209	574	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 elLl Ae v +++ e+a+ lL++ l+s++g++++R+++yf +AL++r+ r++ + + ++ + +e ++ + ++l ++ P+ +++h++ 29889.m003285 209 AELLLLSAEKVGNQQYERASILLNQCDRLSSSTGNAVERVVHYFCKALRERIDRETGKSLGKQHCFNIDEAIMAPSSTILA-SYQEVPFSQVAHFA 303 5789999*********************************************333333333444443333333333333.45667***** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 qaI+e v ++r+H+iD++i G+QW L+qaL s + l+iT+vg +sk+ ++ tg+rL++fAe++ +pf fn+++++++ dl+ + 29889.m003285 304 GIQAIVENVTDAKRIHVIDLGIRVGVQWTGLMQALVSDFdCNLELLKITAVGT---TSKHLIKDTGKRLTSFAESISLPFAFNIVMVSDMLDLTED 396 ********************************87647788*****...6899******************************** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 +++++++ +++V + + l +l sl+++ ++v+k+++ l+P + vv+e e + +s+sF++rf+eal y+sa fd+le+ + +++++r+ +E 29889.m003285 397 QFELDSDQTVVVYCEYLLRSLI----SLPDRLNSVMKVIRILNPSITVVTEPEYNSTSSSFVNRFIEALFYFSAYFDCLESCM-KDNSNRMILESL 487 ************888887....77777788******************************************996.89999*** PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +g+ i+n+va+eg+er+ r+ +l Wr+ ++++G+ + +ls++ +qakl+ +k++ ++ ++ + +sl++gWk+ p+ s+SaW+ 29889.m003285 488 HFGEGIKNIVATEGKERKIRNAKLDAWRAFFTRFGMLETELSTSSLCQAKLIAKKFAcGNACTLSMDGKSLLIGWKGTPMHSLSAWK 574 *****************************************************9999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.144	182	553	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-82	209	574	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence Send to blast
MFNFQEVQDC FSSKNRNPEI VEEANGEPCY GTEDSEESVS NFHQCSDTGF YKDNSSKGSL 60 GFLPQQQEAF LDFGPFDDTR YNILSPPLQT CLKEIEKFGE IKNGIQDHDQ TKKTNQKDQL 120 SSTSLKLLKR YVEGLKRLNS ERIIKPINDT PSMEVPSQEL STEKIVRVAG ERFIQTFTRT 180 VDIVSMLDNP FDLSFSGLSV DEAKKVELAE LLLLSAEKVG NQQYERASIL LNQCDRLSSS 240 TGNAVERVVH YFCKALRERI DRETGKSLGK QHCFNIDEAI MAPSSTILAS YQEVPFSQVA 300 HFAGIQAIVE NVTDAKRIHV IDLGIRVGVQ WTGLMQALVS DFDCNLELLK ITAVGTTSKH 360 LIKDTGKRLT SFAESISLPF AFNIVMVSDM LDLTEDQFEL DSDQTVVVYC EYLLRSLISL 420 PDRLNSVMKV IRILNPSITV VTEPEYNSTS SSFVNRFIEA LFYFSAYFDC LESCMKDNSN 480 RMILESLHFG EGIKNIVATE GKERKIRNAK LDAWRAFFTR FGMLETELST SSLCQAKLIA 540 KKFACGNACT LSMDGKSLLI GWKGTPMHSL SAWKFI

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence Send to blast

MFNFQEVQDC FSSKNRNPEI VEEANGEPCY GTEDSEESVS NFHQCSDTGF YKDNSSKGSL  60
GFLPQQQEAF LDFGPFDDTR YNILSPPLQT CLKEIEKFGE IKNGIQDHDQ TKKTNQKDQL  120
SSTSLKLLKR YVEGLKRLNS ERIIKPINDT PSMEVPSQEL STEKIVRVAG ERFIQTFTRT  180
VDIVSMLDNP FDLSFSGLSV DEAKKVELAE LLLLSAEKVG NQQYERASIL LNQCDRLSSS  240
TGNAVERVVH YFCKALRERI DRETGKSLGK QHCFNIDEAI MAPSSTILAS YQEVPFSQVA  300
HFAGIQAIVE NVTDAKRIHV IDLGIRVGVQ WTGLMQALVS DFDCNLELLK ITAVGTTSKH  360
LIKDTGKRLT SFAESISLPF AFNIVMVSDM LDLTEDQFEL DSDQTVVVYC EYLLRSLISL  420
PDRLNSVMKV IRILNPSITV VTEPEYNSTS SSFVNRFIEA LFYFSAYFDC LESCMKDNSN  480
RMILESLHFG EGIKNIVATE GKERKIRNAK LDAWRAFFTR FGMLETELST SSLCQAKLIA  540
KKFACGNACT LSMDGKSLLI GWKGTPMHSL SAWKFI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	6e-35	216	573	26	377	Protein SCARECROW
5b3h_D	6e-35	216	573	26	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29889.m003285

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025013145.1	0.0	scarecrow-like protein 18
TrEMBL	B9RZP5	0.0	B9RZP5_RICCO; DELLA protein RGL2, putative
STRING	XP_002519214.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17490.1	1e-49	RGA-like protein 3

Link Out ? help Back to Top
Phytozome	29889.m003285