PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29889.m003282 | ||||||||
Common Name | RCOM_1000300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | GRAS | ||||||||
Protein Properties | Length: 335aa MW: 38304.9 Da PI: 4.8671 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 39.8 | 6.7e-13 | 151 | 253 | 5 | 115 |
GRAS 5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l+ Ae vs+g++ +a++lL+ + +s++g+p+qR++ yf AL++r+ ++ ++ + + ++ + ++ +e P+++ +hlt + 29889.m003282 151 FLASAEKVSNGKFDRASRLLEFCDQSSSNAGNPVQRVVYYFFGALRRRIDQELGKITSR--------SLVIIPNPSIQACFEGIPFYQAAHLTGIK 238 6788**********************************************933333221........22344444566778999************ PP GRAS 101 aIleavegeervHii 115 aI e v++++r H + 29889.m003282 239 AIIENVAEANRSHLL 253 ***********9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 8.701 | 121 | 335 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-10 | 151 | 253 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MTKSRIFFFQ EFMHGMPSSL NKTSESMETG KRREELIIHG GDDYVLYHND SLLEGCIFSD 60 YPQQESYSDC RRFSDDPSFS IFSHLQFPPW PDQAAEIQNG IQDNYGNEFN RLNTERSIKP 120 SHSIPFTEVA GQGLSTEEIK RQNMWSLLNF FLASAEKVSN GKFDRASRLL EFCDQSSSNA 180 GNPVQRVVYY FFGALRRRID QELGKITSRS LVIIPNPSIQ ACFEGIPFYQ AAHLTGIKAI 240 IENVAEANRS HLLKITAVET TSKHLIEETE VKEDLIEIDT KEVVAVYSEY ALMNFIVLQD 300 QLGEGFRNTV ATEGEDRDIR NVKLDVWRNF FTQCG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29889.m003282 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021668728.1 | 1e-81 | DELLA protein RGL1-like | ||||
TrEMBL | B9RZP2 | 0.0 | B9RZP2_RICCO; Uncharacterized protein | ||||
STRING | XP_002519211.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 6e-06 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | 29889.m003282 |