PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 29887.m000243 | ||||||||
Common Name | RCOM_0997760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 116aa MW: 13000 Da PI: 10.0358 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62 | 1e-19 | 25 | 112 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffkv ++s++ ++g l++p +f++++ +k+ e++t + r+W+vkl + +++ + +++GW++F+k+n +++gD ++F+l+++++ ++ 29887.m000243 25 FFKVNIRSSHVEHGSLTVPVEFFRSYAKKSIENVT---LQVARRQWTVKLLIYRSPHQGCFSAGWSSFAKENSIQVGDACIFELVNSET--ML 112 99************************866555434...44577*******99999999999**********************987433..34 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.1E-21 | 20 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.02E-20 | 23 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.0E-17 | 25 | 110 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.521 | 25 | 116 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.35E-19 | 25 | 112 | No hit | No description |
SMART | SM01019 | 1.1E-18 | 25 | 116 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 116 aa Download sequence Send to blast |
MQRHSCSKVP EAVVAANKVA SLNPFFKVNI RSSHVEHGSL TVPVEFFRSY AKKSIENVTL 60 QVARRQWTVK LLIYRSPHQG CFSAGWSSFA KENSIQVGDA CIFELVNSET MLLKVS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-14 | 12 | 116 | 35 | 138 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-14 | 12 | 116 | 35 | 138 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 29887.m000243 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025015423.1 | 5e-77 | LOW QUALITY PROTEIN: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | B9T237 | 3e-80 | B9T237_RICCO; Uncharacterized protein | ||||
STRING | XP_002532306.1 | 4e-81 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-15 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 29887.m000243 |