PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 29887.m000237 | ||||||||
Common Name | RCOM_0996800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 194aa MW: 22572.6 Da PI: 11.0722 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.2 | 4e-15 | 95 | 189 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk ++s+ k g l +pk+f+ +++ + ++ + ++ ++r W v+l iy ++s++ +++GW F+++n L++gD+++F+l++r++ +v+ 29887.m000237 95 FFKLVLTSSCVKGGGLNVPKNFIMDMK-P--RTYETNFQV-KNRWWPVRLnIYLRHSRG-KFSAGWILFARENSLQAGDVCIFELIDRETMLIKVS 185 89999******************6663.3..344555444.5699*****555666655.4899**********************9999889999 PP EE-S CS B3 96 vfrk 99 +fr+ 29887.m000237 186 IFRR 189 9997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-16 | 89 | 188 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-17 | 93 | 190 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.2E-13 | 95 | 189 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.605 | 95 | 190 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.05E-19 | 95 | 188 | No hit | No description |
SMART | SM01019 | 2.5E-13 | 95 | 190 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 194 aa Download sequence Send to blast |
MASCSKQDNE RLMFKTNRPH FFKVVLPQTI RERKLEGLIV KRIMAKEASL VKNKGNNKKL 60 TQGKRVRREH VEKPSYSALS GEVEAAEKFT SLHPFFKLVL TSSCVKGGGL NVPKNFIMDM 120 KPRTYETNFQ VKNRWWPVRL NIYLRHSRGK FSAGWILFAR ENSLQAGDVC IFELIDRETM 180 LIKVSIFRRV KQLV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 29887.m000237 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025015425.1 | 3e-96 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | B9T231 | 1e-141 | B9T231_RICCO; Uncharacterized protein | ||||
STRING | XP_002532300.1 | 1e-142 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-13 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 29887.m000237 |