PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29887.m000236 | ||||||||
Common Name | RCOM_0996790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | B3 | ||||||||
Protein Properties | Length: 219aa MW: 24887.6 Da PI: 10.322 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.9 | 1.4e-16 | 121 | 216 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f ++ s+ ++ r+ +p kf+ ++ ++++e+++ +r+W vk+i + ++gr +++GW F++ n L++gD+++F+l++ ++ +v++ 29887.m000236 121 FMSTIQASHIHRDYRMHVPVKFMVKCTKQSRENVM---LIVGNRQWPVKMISSTSDGRSKFSAGWLAFARGNSLQVGDICIFELIDGETVLIKVSI 213 55666778888999************877666533...44567******************************************88888799999 PP E-S CS B3 97 frk 99 fr+ 29887.m000236 214 FRH 216 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.1E-22 | 114 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-20 | 116 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.02E-22 | 119 | 215 | No hit | No description |
SMART | SM01019 | 7.1E-12 | 120 | 217 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.59 | 121 | 217 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.1E-14 | 121 | 216 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MHRFFKIILG DTLRDDFHDP IQETENAASV KTSSHSLPCL KSKETPPLPF PQPHKSMKLE 60 NPTPNINPQS VAGKVEENEN MDSQKQRLNG TVSRKRSQFK EAKATAIQRA SIKYESKNPF 120 FMSTIQASHI HRDYRMHVPV KFMVKCTKQS RENVMLIVGN RQWPVKMISS TSDGRSKFSA 180 GWLAFARGNS LQVGDICIFE LIDGETVLIK VSIFRHVTC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 5e-18 | 93 | 215 | 22 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 5e-18 | 93 | 215 | 22 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29887.m000236 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025015420.1 | 6e-99 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | B9T230 | 1e-163 | B9T230_RICCO; Uncharacterized protein | ||||
STRING | XP_002532299.1 | 1e-164 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 5e-22 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | 29887.m000236 |