PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29883.m001986
Common NameLOC8274722, RCOM_0991570
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bZIP
Protein Properties Length: 441aa    MW: 48026.4 Da    PI: 5.3683
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29883.m001986genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.87.2e-16217275462
                    XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                     kr+rr+q+NRe+ArrsR+RK+a++ eLe  v +L  e+++L  +l  ++k++++   +
  29883.m001986 217 EKRARRMQSNRESARRSRRRKQAQLNELEAQVGQLRDERTSLLTRLTDINKKCDEASVD 275
                    69***************************************************987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.8E-11212270No hitNo description
SMARTSM003387.8E-17214278IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.634216268IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.41E-9218268No hitNo description
PfamPF001701.7E-12218271IPR004827Basic-leucine zipper domain
PROSITE patternPS000360221236IPR004827Basic-leucine zipper domain
PfamPF124983.0E-38285413IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MNSIFSVDDF SDLLWQAPMT RSASEWELEK FLEEFPASSS ICDNNNNDTT TVAVPKSLTS  60
SKRREICEDE VVEIEKVEIN SQPLDRAPLP PPEDTDGYHA FLKSQLDLAC AAAAAAKSRD  120
SSVKPEGVSS SFAEDQRVIN KNCESGSSPV SGNGHGITKG QNEADGGSLR LPALPSMPRK  180
QEVPVRQATS GSSREDSDDD ELEGDTETND NMDPADEKRA RRMQSNRESA RRSRRRKQAQ  240
LNELEAQVGQ LRDERTSLLT RLTDINKKCD EASVDNRILN ANIETLRTKV KMAEDQVKRV  300
TGLNPMVLAR SNMPNMGMQF VAGQTDVSAN VAVPMQPNNN HFFHHSVPDL TSGAPHLQRL  360
SNSCPNNSVT PLATPLPVNN GTSNIGGIAP LQQVTGAQNM TDVPPLQHVQ KQTGPTVSPP  420
ASVLICNKGL SQPVAKDNKK K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230237RRSRRRKQ
2232237SRRRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap29883.m001986
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520974.10.0light-inducible protein CPRF2
TrEMBLB9S4R70.0B9S4R7_RICCO; DNA binding protein, putative
STRINGXP_002520974.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136911825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.17e-40basic leucine zipper 25