PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29869.m001185
Common NameRCOM_0978110
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 593aa    MW: 66987.4 Da    PI: 5.7519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29869.m001185genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.4e-12349392755
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                    ++ErrRR+r+N ++  Lr l+Pk +       l+Ka+iL  A+e++k+Lq
  29869.m001185 349 KAERRRRKRLNGRLYDLRALVPKiS------NLNKASILGDAIEFVKELQ 392
                    79*********************66......8*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-202145IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088814.068342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-15347405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9349392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14350405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-5356394No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MERLRPLVGF KGWDYCVLWI LSDDQRYLEW MDCCCGGTEN TQVNGGEELQ FPVSSVLPCR  60
DIIFQHPRTK SCELLARLSS SMPLESGIHA QALISNEPRW INFSNNSDLN GTVGTRALIP  120
VPGGLLELFV TKQVSEDQHA IDFVTTQCTI LMEQEAMISS TNIDTGFAVN MKMIGEEQSK  180
AYLADHDNME EKDHTNNNQF QQAPITPALE NLNLPYDISA DRIRLCSPPM NFLQQFHYSN  240
DQDNKTKSND HIFFEEAATN SCNGLQDQMD AAASHKIMMM TTNTENMHMK FMEPSSGKKE  300
QQANNDNDSI KHENGRSDSV SDCSNQIDDE NDAKYRRRTG RGPPAKNLKA ERRRRKRLNG  360
RLYDLRALVP KISNLNKASI LGDAIEFVKE LQKQAKELEN ELEEHSDDDQ GVKNGIHNNI  420
PQEILNQDGG IVNGFHVGSS EVVSCSKLNH KSETSHDKGQ QMEVQVEVAQ IDGNEFFVKV  480
FCEHKAGGFM KLMEALDCLG LEVTNANVTS FRGLVSNVFK VEKKDSEMVQ ADXXXXXXVR  540
ESLLELTRDA PRGWPEMAKA SENGSAMDYH HHHHHMHNGH INSNHHHLHH LHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335356RRRTGRGPPAKNLKAERRRRKR
2350357ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMap29869.m001185
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521283.20.0transcription factor ABORTED MICROSPORES
TrEMBLB9S5L40.0B9S5L4_RICCO; Uncharacterized protein
STRINGXP_002521283.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-144bHLH family protein