PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29864.m001503
Common NameLOC8269092, RCOM_0968980
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NF-YA
Protein Properties Length: 336aa    MW: 36470.2 Da    PI: 9.4574
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29864.m001503genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.63.1e-31167223158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    +ep+YVNaKQ+++Il+RRq+Rak+e ekk  +k+rkpylheSRh+hA+rR+Rg+gGrF
  29864.m001503 167 EEPVYVNAKQFNGILRRRQARAKAEIEKKA-IKARKPYLHESRHQHAMRRARGCGGRF 223
                    69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.2E-35165226IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.843166226IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.2E-28168223IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.7E-23169191IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860171191IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.7E-23200223IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MPAKLETRDQ RLDQGVFQSS IYSQPWWRGV GNSSTFEEST SKSSSSDHLN GSLSNGPIRS  60
QANLTLDNGA NSNKDTQVAV SSQSDGINGQ GHHLKQVPSS APVTMVGHVE PNSQMELVGH  120
SIVLTSYPYS DAQYGGMLPS YAPQAMVTPQ LYGMHHARMA LPLEMEEEPV YVNAKQFNGI  180
LRRRQARAKA EIEKKAIKAR KPYLHESRHQ HAMRRARGCG GRFLSSKKPE SNTKNPASDN  240
DVNSCINAST RSAILTGSEW LQKNGTRNLD SANGEGKGST DHDMQSHSSS HGNGNGHGLS  300
SIYHPSSGDG LDRGFLVQQR ASTHWNGVTN GALPIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-20167238274NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29864.m001503
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517826.10.0nuclear transcription factor Y subunit A-1 isoform X1
TrEMBLB9RVQ70.0B9RVQ7_RICCO; Nuclear transcription factor Y subunit A-1, putative
STRINGXP_002517826.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.49e-33nuclear factor Y, subunit A1