PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29851.m002493
Common NameRCOM_0939220
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 591aa    MW: 67670.3 Da    PI: 9.2215
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29851.m002493genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.8e-1527111898
                    -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                    ++ l  + l++p kf++++  +   s   tl+ ++gr W v+l  +k  ++ ++ +GW eFv+   +++g f+vF+++g+s+f  +v +f+
  29851.m002493  27 ASILHDKKLRIPEKFVKKYRDE--LSCIATLTVPNGRIWVVEL--EKVNKKLWFCSGWHEFVEYYSIRVGYFLVFRYEGESNF--RVCIFD 111
                    45556677***********755..7779***************..9999999**************************99999..999887 PP
2B361.21.8e-19254344198
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    f  +l ps+v +  +l +p +fa+++   + +   +tl+ ++g++W v++  r+++    l+kGW eF+ +n+L+egD++vF+l++ ++  l+v++
  29851.m002493 254 FRVILRPSYVYRGFLLHIPSSFAQRYLTTTGC---MTLQVSEGKQWPVRCVCRNRG--AKLSKGWTEFAWDNNLEEGDVCVFELIN-MNV-LKVTI 342
                    667899********************655444...9999***********555554..469**********************997.433.58888 PP

                    E- CS
             B3  97 fr 98 
                    fr
  29851.m002493 343 FR 344
                    86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-2416112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-2416111IPR015300DNA-binding pseudobarrel domain
CDDcd100173.11E-1920111No hitNo description
PROSITE profilePS5086313.29620113IPR003340B3 DNA binding domain
SMARTSM010191.1E-1321113IPR003340B3 DNA binding domain
PfamPF023627.3E-1228111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-26246344IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-24248344IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-23252344No hitNo description
PROSITE profilePS5086313.888254346IPR003340B3 DNA binding domain
SMARTSM010191.5E-14254346IPR003340B3 DNA binding domain
PfamPF023625.2E-18254344IPR003340B3 DNA binding domain
Gene3DG3DSA:3.40.50.3002.0E-13356460IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525401.94E-33388585IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006851.1E-4414455IPR000863Sulfotransferase domain
Gene3DG3DSA:3.40.50.3004.3E-25493586IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006852.9E-19494587IPR000863Sulfotransferase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008146Molecular Functionsulfotransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MSKEMGPEEG SNSPARTNCM FYKLIVASIL HDKKLRIPEK FVKKYRDELS CIATLTVPNG  60
RIWVVELEKV NKKLWFCSGW HEFVEYYSIR VGYFLVFRYE GESNFRVCIF DLTVSEIRYP  120
GNCVPASSQV PCHDNPCHVA HKKHVVTNGP TGILGSGNPS HTTAPSRSML FDKFVHSKWT  180
VTGNYEASRE MLLSRKDAYD SQDIDVQLNG MDKRSPSMKI ACEALTRRWR AVTPEEKQRT  240
ICAAHTFKPD NPFFRVILRP SYVYRGFLLH IPSSFAQRYL TTTGCMTLQV SEGKQWPVRC  300
VCRNRGAKLS KGWTEFAWDN NLEEGDVCVF ELINMNVLKV TIFRLLPHHL TSITKKIKQP  360
QKGCRNYQEL IPTPPKGKAG GLNISSSIKA FWLPSKPALK GLLLLQDHFI SKPHDVILAT  420
SPKCGTTWLR ALIFAVLNRH SCDFSTHPLL TGNPQELFLS WRLTYIRMNP LLILTIFHHL  480
AFSLRTSPTL CSQNLCQLLI VGVSHYGTYW DHVLSYWKAR LEASHKVLFL KYEDMKREPS  540
VHVQRLADFL GNPFSMEEKS KGVVEETIEL CSFENLSSLE VNRSTDSQVF Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-4022334518142B3 domain-containing transcription factor VRN1
4i1k_B5e-4022334518142B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29851.m002493
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574596.10.0B3 domain-containing transcription factor VRN1 isoform X2
TrEMBLB9RZH10.0B9RZH1_RICCO; Sulfotransferase
STRINGXP_002519140.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-78B3 family protein