PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29851.m002487 | ||||||||
Common Name | RCOM_0939060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | B3 | ||||||||
Protein Properties | Length: 109aa MW: 12883.7 Da PI: 8.0752 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45 | 1.9e-14 | 11 | 88 | 16 | 97 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 lp kf++e+g++ ++ +lt +++gr+W+v l+ k +++ +l +GW eF++ + ++ g f+vF+++g s+f +v +f 29851.m002487 11 QGLPLKFVKEYGNELANIAKLT-VSSNGRVWRVGLT--KERNHtWYLHNGWHEFASYHSICYGYFLVFEYKGMSNF--KVFIF 88 579********86644444444.4579********5..54444467999*********************998888..55555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.055 | 1 | 91 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-5 | 7 | 91 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.2E-19 | 11 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.2E-11 | 12 | 87 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.69E-18 | 12 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.17E-12 | 13 | 89 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MDGIFNFEHL QGLPLKFVKE YGNELANIAK LTVSSNGRVW RVGLTKERNH TWYLHNGWHE 60 FASYHSICYG YFLVFEYKGM SNFKVFIFDM SACEIPYWCN KDPPSNMKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29851.m002487 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021680739.1 | 5e-28 | B3 domain-containing transcription factor VRN1-like isoform X2 | ||||
TrEMBL | B9RZG5 | 2e-77 | B9RZG5_RICCO; DNA binding protein, putative | ||||
STRING | XP_002519134.1 | 4e-78 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-20 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 29851.m002487 |