PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29851.m002411 | ||||||||
Common Name | LOC8279500, RCOM_0936360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | LSD | ||||||||
Protein Properties | Length: 142aa MW: 15434.6 Da PI: 5.5203 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 45.1 | 1.6e-14 | 56 | 80 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+CrtlLsYPrGA++V+C++C+ V 29851.m002411 56 CGSCRTLLSYPRGARHVQCSSCQMV 80 ***********************88 PP | |||||||
2 | zf-LSD1 | 31.6 | 2.8e-10 | 94 | 117 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+C +lL+YP+ A+sVRC++C 29851.m002411 94 CGKCEILLMYPYPASSVRCSSCCS 117 **********************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.5E-17 | 53 | 83 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.0E-12 | 56 | 80 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.6E-8 | 91 | 119 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-9 | 94 | 118 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MIESKEGEAM EVENKQQADD VEDGPPSGWQ SIPLPLPLPQ PSPPPPPSSE MAQMVCGSCR 60 TLLSYPRGAR HVQCSSCQMV NFVLEAHEVG QVNCGKCEIL LMYPYPASSV RCSSCCSVTE 120 IGAHNKRPPW SVIQGHPPNP IH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29851.m002411 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002519059.1 | 1e-100 | protein LOL2 | ||||
Swissprot | O65426 | 6e-43 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | B9RZ90 | 1e-98 | B9RZ90_RICCO; Uncharacterized protein | ||||
STRING | XP_002519059.1 | 2e-99 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13026 | 31 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 6e-36 | lsd one like 2 |
Link Out ? help Back to Top | |
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Phytozome | 29851.m002411 |
Entrez Gene | 8279500 |