PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29851.m002411
Common NameLOC8279500, RCOM_0936360
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LSD
Protein Properties Length: 142aa    MW: 15434.6 Da    PI: 5.5203
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29851.m002411genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD145.11.6e-145680125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   Cg+CrtlLsYPrGA++V+C++C+ V
  29851.m002411 56 CGSCRTLLSYPRGARHVQCSSCQMV 80
                   ***********************88 PP

2zf-LSD131.62.8e-1094117124
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                    Cg+C +lL+YP+ A+sVRC++C  
  29851.m002411  94 CGKCEILLMYPYPASSVRCSSCCS 117
                    **********************65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.5E-175383IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-125680IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.6E-891119IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-994118IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MIESKEGEAM EVENKQQADD VEDGPPSGWQ SIPLPLPLPQ PSPPPPPSSE MAQMVCGSCR  60
TLLSYPRGAR HVQCSSCQMV NFVLEAHEVG QVNCGKCEIL LMYPYPASSV RCSSCCSVTE  120
IGAHNKRPPW SVIQGHPPNP IH
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29851.m002411
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519059.11e-100protein LOL2
SwissprotO654266e-43LOL2_ARATH; Protein LOL2
TrEMBLB9RZ901e-98B9RZ90_RICCO; Uncharacterized protein
STRINGXP_002519059.12e-99(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.16e-36lsd one like 2