PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29848.m004544
Common NameRCOM_0921060
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 139aa    MW: 16521 Da    PI: 9.8512
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29848.m004544genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.14.9e-2085131247
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTE CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkv 47 
                    +Dgy+WrKYGqK+ k+++ pr+Y+rC++a gCpvkkk  ++ +d  +
  29848.m004544  85 RDGYQWRKYGQKVTKDNPSPRAYFRCSMApGCPVKKKFIKKLKDYYF 131
                    7***************************99*******9888877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-1975131IPR003657WRKY domain
PROSITE profilePS5081118.32679135IPR003657WRKY domain
SuperFamilySSF1182901.7E-1681133IPR003657WRKY domain
SMARTSM007742.5E-1284138IPR003657WRKY domain
PfamPF031061.8E-1586124IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MESLQDELER TQKENETLRF MLEVMSRKFS TLQANFQEKK VQETPSSSCY EVYESNKRPR  60
IEIPLSKPSQ IFVRTDSKDK SLIVRDGYQW RKYGQKVTKD NPSPRAYFRC SMAPGCPVKK  120
KFIKKLKDYY FFSTSCCWP
Cis-element ? help Back to Top
SourceLink
PlantRegMap29848.m004544
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025012488.12e-84WRKY transcription factor WRKY71, partial
TrEMBLB9RNW36e-98B9RNW3_RICCO; Uncharacterized protein
STRINGXP_002515432.19e-99(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.29e-24WRKY DNA-binding protein 18