PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29848.m004493
Common NameLOC8265222, RCOM_0920160
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family CO-like
Protein Properties Length: 332aa    MW: 36458.6 Da    PI: 6.059
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29848.m004493genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box284.5e-09446440
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                   + C+ +++  ++lfC+ ++ +lC +C +++H        H +v
  29848.m004493  4 KLCDSCKSATATLFCRPDSAFLCINCDSKIHAAnklasrHARV 46
                   68*****************************655666667665 PP
2zf-B_box27.47e-094791442
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                    +C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  29848.m004493 47 LICEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPI 91
                   68*****************************66899999*99997 PP
3CCT70.54.3e-24268311144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  29848.m004493 268 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 311
                    9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.7E-14148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.68148IPR000315B-box-type zinc finger
PfamPF006431.3E-6446IPR000315B-box-type zinc finger
CDDcd000212.95E-9548No hitNo description
PROSITE profilePS5011911.2344491IPR000315B-box-type zinc finger
PfamPF006433.8E-74791IPR000315B-box-type zinc finger
CDDcd000211.29E-94891No hitNo description
SMARTSM003362.8E-114991IPR000315B-box-type zinc finger
PfamPF062034.9E-18268310IPR010402CCT domain
PROSITE profilePS5101716.787268310IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRP DSAFLCINCD SKIHAANKLA SRHARVLICE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP ITPFYDSVSS VNNKPNAVNL LDDRYFSDVD  120
GDAADVSREE AEAASWLLPN PPNTKLVENS DPNTGQYVFS DMDPYLDLDY GPGDPKLEAQ  180
EQNSSGTDGV VPVKSSKNVQ APFVNDNCFE LDFTGSKPFP YGYNAQCLSN SVSSSSLDVG  240
VVPDGGDISN PYSKSTMESV QQLSAVDREA RVLRYREKRK NRKFEKTIRY ASRKAYAETR  300
PRIKGRFAKR TDIDVEADRS SSINAFGVVP SF
Cis-element ? help Back to Top
SourceLink
PlantRegMap29848.m004493
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515382.10.0zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-145COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLB9RNR30.0B9RNR3_RICCO; Salt-tolerance protein, putative
STRINGXP_002515382.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-140CONSTANS-like 4