PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29841.m002892
Common NameRCOM_0901180
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family FAR1
Protein Properties Length: 509aa    MW: 58963.4 Da    PI: 5.0377
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29841.m002892genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.91.4e-2260142290
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    fYn YAk+ GF vr+s++ ++ +++e ++ +f Cs  g++++++ +     ++r+etrtgC a++k +++++++w+++++e eHnH ++
  29841.m002892  60 FYNCYAKDQGFGVRVSNTWYR-KSKERYRGKFSCSSAGFKKKSEAN-----KPRPETRTGCPAMIKFRLMENKRWRIIEVEIEHNHLIS 142
                    9***************99997.66779**************99888.....9**********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.9E-2060142IPR004330FAR1 DNA binding domain
PfamPF044343.8E-6382427IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.248394430IPR007527Zinc finger, SWIM-type
SMARTSM005759.6E-5405432IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MDEVSLNTEP VGDNDTDEFE IEGDCAMTEC VGQTGVIQGE NPLPPAVGME FDSYEDVYYF  60
YNCYAKDQGF GVRVSNTWYR KSKERYRGKF SCSSAGFKKK SEANKPRPET RTGCPAMIKF  120
RLMENKRWRI IEVEIEHNHL ISPASGKFYK SHKLIGAGTK RTLQLDSPDE VQKIRLYRTV  180
IVDAEGNGDV DDDEGKYADL LHSHQLQLKE GDAQAVQDFF CRVQLMDPDF FYVVDRNEQG  240
YMRNLFWADS RSRVAYGYFG DVIVIDTTCL KDKFEVPLQN EIVPSVFEGY LDKDTPLKEF  300
LNKYDQALQT NHQLEALADK DSRNSSSGLK SRCYFELQLS KLYTNEILRR FEKEVEGMYA  360
CFSTRQANLD GPLITYIVKE QVEVEGNRQE MRDFEVMYNT SEMDILCVCG LFNFRGYLCR  420
HALSVLNQNG LEEIPPQYIL TRWRKDVKRS YVLDHSTGGI DINNAVHRYD QLYKSIVRVV  480
EEGRKSEDHY KITLKGLEEI LNKLRFLED
Cis-element ? help Back to Top
SourceLink
PlantRegMap29841.m002892
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573768.20.0LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 6
TrEMBLB9RVA10.0B9RVA1_RICCO; Uncharacterized protein
STRINGXP_002517670.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.18e-74FAR1-related sequence 6