PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29841.m002799

Common Name

RCOM_0897930

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

CPP

Protein Properties

Length: 348aa MW: 38599.6 Da PI: 8.7373

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29841.m002799	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.9	3.2e-16	19	57	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCk+skClk+YCeCfaag++C ++C CedC+N+ e 29841.m002799 19 CKRCNCKRSKCLKLYCECFAAGVYCLDSCACEDCFNRPE 57 89**********************************876 PP
2	TCR	52.9	7e-17	103	142	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkkskClkkYCeC++ag+ Cs+ C+Ce+CkN+ 29841.m002799 103 RHKRGCNCKKSKCLKKYCECYQAGVGCSSGCRCEGCKNSY 142 589***********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.1E-16	17	58	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.781	18	143	IPR005172	CRC domain
Pfam	PF03638	2.6E-12	20	55	IPR005172	CRC domain
SMART	SM01114	4.1E-17	103	144	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.4E-12	105	141	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MVYYVFRKRA KPINDSEGCK RCNCKRSKCL KLYCECFAAG VYCLDSCACE DCFNRPEYED 60 TVLDTRQQIE ARNPLAFAPK VVKQATNSPA NEEGNWTTPS SARHKRGCNC KKSKCLKKYC 120 ECYQAGVGCS SGCRCEGCKN SYGKKAVSVY RRAEKSEKSS HEMLDASEAQ DEFIRTGRAH 180 QFTSVWDEFA DITPVSRRHS GLIATSGSLN IGNSSKASQA QAHQRSSMLS SDGYLHSHHS 240 PTSLAPKLLY GSEAMPELSP DSLLYNMLKE DDTPEMPIKT CTPTKMVKAG SPNQKRVSPP 300 QIRSQDLRSS SSKGLRSGRK FNLPDMPSFP PLTPYSKSKD GVQQIDGD

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MVYYVFRKRA KPINDSEGCK RCNCKRSKCL KLYCECFAAG VYCLDSCACE DCFNRPEYED  60
TVLDTRQQIE ARNPLAFAPK VVKQATNSPA NEEGNWTTPS SARHKRGCNC KKSKCLKKYC  120
ECYQAGVGCS SGCRCEGCKN SYGKKAVSVY RRAEKSEKSS HEMLDASEAQ DEFIRTGRAH  180
QFTSVWDEFA DITPVSRRHS GLIATSGSLN IGNSSKASQA QAHQRSSMLS SDGYLHSHHS  240
PTSLAPKLLY GSEAMPELSP DSLLYNMLKE DDTPEMPIKT CTPTKMVKAG SPNQKRVSPP  300
QIRSQDLRSS SSKGLRSGRK FNLPDMPSFP PLTPYSKSKD GVQQIDGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	7e-19	20	140	12	120	Protein lin-54 homolog
5fd3_B	7e-19	20	140	12	120	Protein lin-54 homolog
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29841.m002799

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015573809.1	0.0	CRC domain-containing protein TSO1 isoform X1
Refseq	XP_015573811.1	0.0	CRC domain-containing protein TSO1 isoform X3
TrEMBL	B9RV08	0.0	B9RV08_RICCO; Tso1, putative
STRING	XP_002517577.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14277	14	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-66	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	29841.m002799