PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29838.m001724
Common NameLOC8266899, RCOM_0886760
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GATA
Protein Properties Length: 311aa    MW: 33251.7 Da    PI: 4.8104
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29838.m001724genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.1e-16221256134
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                    C++Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg
  29838.m001724 221 CTHCGISSksTPMMRRGPAGPRTLCNACGLKWANKG 256
                    *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.28281116IPR010399Tify domain
SMARTSM009791.7E-1181116IPR010399Tify domain
PfamPF062001.9E-1285115IPR010399Tify domain
PROSITE profilePS5101713.275148190IPR010402CCT domain
PfamPF062031.1E-15148190IPR010402CCT domain
SMARTSM004011.7E-13215269IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.985215272IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-11218266No hitNo description
Gene3DG3DSA:3.30.50.102.4E-15219262IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.07E-14220271No hitNo description
PfamPF003201.2E-13221256IPR000679Zinc finger, GATA-type
PROSITE patternPS003440221248IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MPNSNIQGSL YTTGEPMNIH NTHLEEEEEE EDEDIGGGGE ESIDNPNNHY ENGGGSVVGG  60
VEGDAIQVTG DPDYPLVAVY GGGSSDQLTL SFQGEVYVFD AVSPDKVQAV LLLLGGYEIP  120
SGIPTTETVS LNQRGYTDLS GRSTQPHRAA SLRRFREKRK ERCFDKKIRY TVRKEVALRM  180
QRKKGQFTSS KNSSDEMGSG SSLWSGPQGS GQDESLMETS CTHCGISSKS TPMMRRGPAG  240
PRTLCNACGL KWANKGILRD LSKMPSAGIQ GPPAKPMEQG EGEANNTAVV TAGGERLSTS  300
NGDNLALTAE T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152160RRFREKRKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29838.m001724
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002522687.10.0GATA transcription factor 24
SwissprotQ8GXL72e-77GAT24_ARATH; GATA transcription factor 24
TrEMBLB9S9L80.0B9S9L8_RICCO; GATA transcription factor, putative
STRINGXP_002522687.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-69ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]