PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29838.m001708
Common NameRCOM_0886500
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 422aa    MW: 48138.9 Da    PI: 4.872
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29838.m001708genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.95.7e-381322651128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                    +p+G+rF P+deelv +yLk+k+eg +l+l   i++vdiyk++P++L  +    +e+ewyfF++r++ +++g+r++r++++gyWk tg++kev + 
  29838.m001708 132 MPVGYRFMPNDEELV-NYLKHKIEGFPLPL-GLIHDVDIYKFHPQELTgEYELIGEREWYFFTPRNRISPNGSRPSRKASNGYWKPTGSEKEVPN- 224
                    699************.9*************.99**************9433335899*************************************9. PP

            NAM  96 kgelvglkktLvfy........kgrapkgektdWvmheyrl 128
                    +++ vg++ +L +y        k ++++g++tdW mhey +
  29838.m001708 225 EESPVGVRMSLDYYefanteiqKRKQSSGTRTDWKMHEYIV 265
                    999***********88888886689999***********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-44128290IPR003441NAC domain
PROSITE profilePS5100540.59132290IPR003441NAC domain
PfamPF023651.0E-20133264IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MEGPYDIPEK SSDNNNNNVS NNNHCSTVCG KAINNNAVLA DANIEANSAS EAVLMPFPYS  60
YLHEQDNDYN NSIIVNADVV NNNIGENFMP LHYDQFLYSN MGNNNNNSNN DNAIVAYENV  120
SDYGIKGNFR GMPVGYRFMP NDEELVNYLK HKIEGFPLPL GLIHDVDIYK FHPQELTGEY  180
ELIGEREWYF FTPRNRISPN GSRPSRKASN GYWKPTGSEK EVPNEESPVG VRMSLDYYEF  240
ANTEIQKRKQ SSGTRTDWKM HEYIVKQYKD NGNEYRKKFH ALAICKIYKK KAKNDEDEPA  300
AGTSSSVPKK APIQSQEPSS YGFQPISRFE EQAYWTQMMI TANNLLVPQA TTYAELVNNE  360
VTNVQPVPAQ IVEDQRDNSC PDSQRQNDDS CPDNEHQNDD SGLYCIVHSS RSWNKRLEKN  420
PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-3613229217167NO APICAL MERISTEM PROTEIN
1ut4_B3e-3613229217167NO APICAL MERISTEM PROTEIN
1ut7_A3e-3613229217167NO APICAL MERISTEM PROTEIN
1ut7_B3e-3613229217167NO APICAL MERISTEM PROTEIN
3swm_A4e-3613229220170NAC domain-containing protein 19
3swm_B4e-3613229220170NAC domain-containing protein 19
3swm_C4e-3613229220170NAC domain-containing protein 19
3swm_D4e-3613229220170NAC domain-containing protein 19
3swp_A4e-3613229220170NAC domain-containing protein 19
3swp_B4e-3613229220170NAC domain-containing protein 19
3swp_C4e-3613229220170NAC domain-containing protein 19
3swp_D4e-3613229220170NAC domain-containing protein 19
4dul_A3e-3613229217167NAC domain-containing protein 19
4dul_B3e-3613229217167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29838.m001708
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9S9K20.0B9S9K2_RICCO; Transcription factor, putative
STRINGXP_002522671.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-37NAC family protein